[1] "2025-04-30 01:38:45 MDT" [1] "1609" "161007" "d281" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161007a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 77220 63 [1] 77220 [1] 77220 [1] "testing skipping spike filter" [1] 77220 [1] 77220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:38:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.975, ave o2scale2 = 0.802" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.975, ave o2scale2 = 0.802" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:38:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:38:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:39:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:39:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1264 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:39:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.96 co2off = 419.25 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.96 minutes" [1] "Average Cal: 8.25 minutes" [1] "Shortest Cal: 6.76 minutes" [1] "Longest Cal: 8.99 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 179 187 0.1396286 0.1458510 0.1435361 3 -30.056946 64.72568 3 4 188 196 0.1466026 0.1528455 0.1504826 3 -7.632777 -59.83834 4 3 197 205 0.1536142 0.1597213 0.1589424 3 -21.029018 38.00632 6 4 443 449 0.3487656 0.3534615 0.3518999 2 -7.613950 -51.72152 7 2 450 457 0.3542521 0.3597429 0.3577827 2 -30.036573 59.80138 8 5 458 465 0.3605107 0.3659582 0.3655631 NA -9.783750 -64.58735 10 2 711 719 0.5565189 0.5627272 0.5603820 2 -30.048750 60.76783 12 3 728 736 0.5705082 0.5767282 0.5759475 2 -21.034527 44.89758 14 4 969 976 0.7646833 0.7702097 0.7682400 2 -7.696729 -61.30024 15 2 977 984 0.7709911 0.7764250 0.7745014 2 -30.106198 58.82023 17 2 1233 1240 0.9726861 0.9782747 0.9762597 3 -30.159094 56.10196 18 4 1241 1248 0.9790456 0.9845497 0.9825599 3 -7.753990 -52.40426 20 3 1257 1264 0.9916282 0.9971295 0.9967408 3 -21.144958 46.03591 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.025978 1.246816 -0.0032353952 5.26621482 0.008046692 18.5971790 3 1.025875 1.246682 0.0026880372 0.04815714 0.007536790 3.0589918 4 1.026015 1.246881 -0.0009933299 -0.20659992 0.003013795 0.2375387 6 1.026553 1.247617 -0.0023106267 0.83083883 0.004302389 3.3530528 7 1.026620 1.247728 -0.0038880112 -0.44182695 0.009105408 1.6455191 8 1.026520 1.247639 -0.4123030758 -1.72263103 0.323854906 1.3863319 10 1.026551 1.247884 -0.0059271789 0.43036066 0.014977109 2.2947069 12 1.026549 1.247783 -0.0007552577 3.74385708 0.006111897 11.0935428 14 1.025140 1.246374 0.0019435210 -1.04453339 0.007433315 3.1112699 15 1.025143 1.246393 -0.0031189308 0.59055609 0.007761022 1.3819596 17 1.023895 1.244976 -0.0030486258 0.86882399 0.007083735 2.2203619 18 1.023761 1.244811 0.0012118520 0.27871923 0.006018905 0.7590733 20 1.023732 1.244801 -0.0008011944 1.97413696 0.002528484 1.5625643 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 413.515 co2l1 = 0.959 co2l0 = 0.053" [1] "co2l0 = -103.05 co2l1 = 0.205" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "115 out of 160 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "45 out of 1093 1-min values rejected as stack air" [1] "45 out of 1093 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"