[1] "2025-04-30 01:38:17 MDT" [1] "1609" "161006" "d280" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161006a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 76800 63 [1] 76800 [1] 76800 [1] "testing skipping spike filter" [1] 76800 [1] 76800 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:38:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.979, ave o2scale2 = 0.806" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "32 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.979, ave o2scale2 = 0.806" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "32 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:38:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:38:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:38:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:38:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 32 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1247 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:38:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 418.69 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.86 minutes" [1] "Average Cal: 7.93 minutes" [1] "Shortest Cal: 6.79 minutes" [1] "Longest Cal: 8.93 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 122 129 0.09702558 0.1025048 0.1005662 2 -7.809521 -64.16294 3 2 130 137 0.10328845 0.1087360 0.1068061 2 -30.249771 52.40181 4 5 138 145 0.10951319 0.1150343 0.1146315 NA -10.033562 -35.11139 6 2 382 389 0.30515486 0.3105845 0.3086301 1 -30.261146 63.19371 10 4 633 640 0.51442425 0.5197868 0.5178746 2 -7.788531 -63.49157 11 2 641 649 0.52054792 0.5267280 0.5244013 2 -30.199652 55.13060 13 2 900 907 0.72343880 0.7289260 0.7269759 3 -30.095917 58.01742 14 4 908 913 0.72969881 0.7358996 0.7341410 3 -7.682695 -71.65433 16 3 921 929 0.74379508 0.7499466 0.7491596 3 -21.034080 47.34819 18 4 1159 1166 0.93087028 0.9363246 0.9343935 2 -7.654677 -57.92972 19 2 1167 1174 0.93709355 0.9425560 0.9406133 2 -30.076479 62.18373 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.019535 1.239696 -0.0009397419 -1.83190998 0.002273718 8.683665 3 1.019521 1.239684 -0.0019514018 -0.73515498 0.005655013 2.934508 4 1.019371 1.239382 -0.4818144667 17.43251354 0.382102827 14.298912 6 1.019146 1.238571 -0.0032402220 0.89071788 0.007107728 2.764963 10 1.020731 1.240170 0.0029672222 -0.89304479 0.006156773 1.927828 11 1.020978 1.240481 0.0012539910 -1.38877510 0.005788915 5.667130 13 1.023393 1.243345 -0.0026752707 1.45897337 0.005884522 4.970379 14 1.023399 1.243292 0.0019736690 -0.18101428 0.006036193 22.360770 16 1.023850 1.244021 -0.0024891955 -0.97808063 0.007546015 1.780582 18 1.024064 1.244452 0.0020584711 -0.08240647 0.004390760 3.047815 19 1.024212 1.244636 -0.0044737742 -0.71239756 0.009843515 4.495192 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 413.607 co2l1 = 0.959 co2l0 = 0.134" [1] "co2l0 = -103.25 co2l1 = 0.209" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 285 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "250 out of 1085 1-min values rejected as stack air" [1] "250 out of 1085 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"