[1] "2025-04-30 01:38:05 MDT" [1] "1609" "161005" "d279" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161005a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 40980 63 [1] 40980 [1] 40980 [1] "testing skipping spike filter" [1] 40980 [1] 40980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:38:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.975, ave o2scale2 = 0.802" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.975, ave o2scale2 = 0.802" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "43 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:38:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:38:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:38:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:38:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 639 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:38:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.957 co2off = 402.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.86 minutes" [1] "Average Cal: 7.89 minutes" [1] "Shortest Cal: 6.85 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 8 0.4899370 0.4953979 0.4934291 1 -7.504990 -42.61317 4 4 239 246 0.6805998 0.6860842 0.6841329 2 -7.579427 -64.20462 5 2 247 253 0.6868676 0.6916273 0.6900409 2 -30.030812 39.68086 7 2 500 507 0.8889141 0.8943461 0.8924111 2 -30.139656 41.42836 8 4 508 515 0.8951266 0.9006334 0.8986521 2 -7.703646 -57.85327 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.034782 1.254769 1.012667e-03 3.249000 0.002904581 11.91221 4 1.026654 1.247391 -1.216257e-03 -1.982825 0.003427238 12.40022 5 1.026545 1.247260 -5.096995e-03 -10.559854 0.010433008 19.69477 7 1.021727 1.242309 -2.383248e-03 7.321005 0.006625088 18.38175 8 1.021510 1.242077 1.342904e-05 2.463463 0.003320313 10.68996 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 413.452 co2l1 = 0.958 co2l0 = 0" [1] "co2l0 = -100.98 co2l1 = 0.247" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "170 out of 190 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "20 out of 549 1-min values rejected as stack air" [1] "20 out of 549 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"