[1] "2025-04-30 01:37:18 MDT" [1] "1609" "161003" "d277" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161003a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 74460 63 [1] 74460 [1] 74460 [1] "testing skipping spike filter" [1] 74460 [1] 74460 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:37:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.986, ave o2scale2 = 0.811" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "48 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.986, ave o2scale2 = 0.811" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "52 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:37:22 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:37:22 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:37:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:37:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 52 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1188 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:37:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.96 co2off = 409.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.05 minutes" [1] "Average Cal: 7.37 minutes" [1] "Shortest Cal: 3.44 minutes" [1] "Longest Cal: 8.29 minutes" [1] "Removed 6 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 3 [3,] 4 5 [4,] 6 7 [5,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 123 130 0.1113365 0.1169243 0.1149311 2 -30.863750 79.72439 3 4 131 138 0.1177031 0.1233190 0.1212971 2 -8.454135 -58.53755 8 2 381 387 0.3262193 0.3311034 0.3294872 1 -30.898062 59.54416 10 2 626 633 0.5282040 0.5338142 0.5317965 2 -30.926656 56.44783 11 4 634 641 0.5346228 0.5402318 0.5382459 2 -8.494469 -53.50814 14 4 881 888 0.7362317 0.7418262 0.7398301 2 -8.509885 -57.86117 15 2 889 896 0.7426376 0.7483958 0.7463352 2 -30.934635 61.58899 18 2 1130 1136 0.9452212 0.9500966 0.9484760 2 -30.874250 53.06145 19 4 1137 1144 0.9509352 0.9566328 0.9545910 2 -8.434240 -50.46100 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.020164 1.239706 -0.004339868 5.9073929 0.009868669 13.723161 3 1.019997 1.239227 0.002018980 -4.3095078 0.005047341 11.774826 8 1.017533 1.236754 -0.002823797 -12.0408277 0.005864685 25.252184 10 1.013870 1.233032 -0.002641990 -1.9755248 0.008069595 8.680749 11 1.013660 1.232892 0.001657527 -7.4363087 0.006176537 21.348890 14 1.010571 1.229632 -0.000992013 -4.1725706 0.004467490 9.692008 15 1.010733 1.229822 -0.001719916 -2.9755670 0.005015510 8.437164 18 1.011211 1.230212 -0.001436003 3.0773140 0.003445729 6.683624 19 1.011212 1.230308 0.005418019 -0.6371952 0.012297574 2.814670 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.3 co2l1 = 0.959 co2l0 = 0" [1] "co2l0 = -104.18 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "96 out of 837 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "741 out of 1022 1-min values rejected as stack air" [1] "741 out of 1022 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"