[1] "2025-04-30 01:36:55 MDT" [1] "1609" "161002" "d276" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161002a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 74460 63 [1] 74460 [1] 74460 [1] "testing skipping spike filter" [1] 74460 [1] 74460 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:36:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.977, ave o2scale2 = 0.803" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "35 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.977, ave o2scale2 = 0.803" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:36:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:36:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:37:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:37:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 301 row(s) with low FLWTA" [1] "TEMP: 898 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:37:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 408.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.07 minutes" [1] "Average Cal: 7.7 minutes" [1] "Shortest Cal: 5.74 minutes" [1] "Longest Cal: 8.27 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 35 40 0.2781999 0.2821871 0.2810022 2 -31.133672 65.67150 3 4 41 47 0.2845911 0.2901973 0.2886105 2 -8.721695 -66.80744 6 4 289 296 0.4865509 0.4922057 0.4901671 2 -8.605031 -67.36236 7 2 297 304 0.4930172 0.4987308 0.4966814 2 -31.038083 63.56880 11 4 535 542 0.7015772 0.7073173 0.7052661 2 -8.575240 -56.22996 12 3 543 550 0.7081084 0.7137302 0.7133173 2 -21.963021 38.26615 14 4 783 790 0.9032457 0.9088495 0.9068246 2 -8.495125 -68.29931 15 2 791 798 0.9096715 0.9153962 0.9133538 2 -30.925750 52.40314 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.024392 1.247238 -0.0113469879 4.9619578 0.0175100696 10.554418 3 1.024386 1.247103 0.0031535400 9.5138873 0.0068923625 17.695374 6 1.024413 1.245939 0.0001524217 3.2460978 0.0013663078 14.710108 7 1.024501 1.245959 -0.0020558322 1.0241970 0.0061788028 20.726598 11 1.023448 1.244005 0.0038407820 0.7173753 0.0091846864 7.928993 12 1.023320 1.243856 -0.0001925278 -2.8694761 0.0005515131 2.412935 14 1.021459 1.241664 -0.0006478101 -0.5052735 0.0024199690 2.682168 15 1.021424 1.241642 -0.0016983864 2.2562610 0.0050709035 9.026894 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.426 co2l1 = 0.959 co2l0 = 0" [1] "co2l0 = -102.87 co2l1 = 0.208" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "91 out of 614 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "523 out of 769 1-min values rejected as stack air" [1] "523 out of 769 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"