[1] "2017-09-20 22:55:07 MDT"
[1] "1609"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1609/161002.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1609/161003.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1609/161004.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1609/161005.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1609/161006.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1609/161007.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1609/161008.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1609/161009.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1609/161010.html"  
[10] "/net/www/docs/homes/stephens/GO2/1609/161011.html"  
[11] "/net/www/docs/homes/stephens/GO2/1609/161012.html"  
[12] "/net/www/docs/homes/stephens/GO2/1609/161013.html"  
[13] "/net/www/docs/homes/stephens/GO2/1609/161014.html"  
[14] "/net/www/docs/homes/stephens/GO2/1609/161015.html"  
[15] "/net/www/docs/homes/stephens/GO2/1609/161016.html"  
[16] "/net/www/docs/homes/stephens/GO2/1609/161017.html"  
[17] "/net/www/docs/homes/stephens/GO2/1609/lmg_1609.html"
 [1] "/net/www/docs/homes/stephens/GO2/1609/161002.html"
 [2] "/net/www/docs/homes/stephens/GO2/1609/161003.html"
 [3] "/net/www/docs/homes/stephens/GO2/1609/161004.html"
 [4] "/net/www/docs/homes/stephens/GO2/1609/161005.html"
 [5] "/net/www/docs/homes/stephens/GO2/1609/161006.html"
 [6] "/net/www/docs/homes/stephens/GO2/1609/161007.html"
 [7] "/net/www/docs/homes/stephens/GO2/1609/161008.html"
 [8] "/net/www/docs/homes/stephens/GO2/1609/161009.html"
 [9] "/net/www/docs/homes/stephens/GO2/1609/161010.html"
[10] "/net/www/docs/homes/stephens/GO2/1609/161011.html"
[11] "/net/www/docs/homes/stephens/GO2/1609/161012.html"
[12] "/net/www/docs/homes/stephens/GO2/1609/161013.html"
[13] "/net/www/docs/homes/stephens/GO2/1609/161014.html"
[14] "/net/www/docs/homes/stephens/GO2/1609/161015.html"
[15] "/net/www/docs/homes/stephens/GO2/1609/161016.html"
[16] "/net/www/docs/homes/stephens/GO2/1609/161017.html"
[1] "161002" "161017"
 [1] "161002" "161003" "161004" "161005" "161006" "161007" "161008" "161009"
 [9] "161010" "161011" "161012" "161013" "161014" "161015" "161016" "161017"
[1] "000000" "999999"
[1] "161002_mr_proc.txt, 161002_cal_periods.txt, 161002_cal_param.txt,899jogs"
[1] "161003_mr_proc.txt, 161003_cal_periods.txt, 161003_cal_param.txt,1188jogs"
[1] "161004_mr_proc.txt, 161004_cal_periods.txt, 161004_cal_param.txt,1202jogs"
[1] "161005_mr_proc.txt, 161005_cal_periods.txt, 161005_cal_param.txt,639jogs"
[1] "161006_mr_proc.txt, 161006_cal_periods.txt, 161006_cal_param.txt,1248jogs"
[1] "161007_mr_proc.txt, 161007_cal_periods.txt, 161007_cal_param.txt,1266jogs"
[1] "161008_mr_proc.txt, 161008_cal_periods.txt, 161008_cal_param.txt,1089jogs"
[1] "161009_mr_proc.txt, 161009_cal_periods.txt, 161009_cal_param.txt,1328jogs"
[1] "161010_mr_proc.txt, 161010_cal_periods.txt, 161010_cal_param.txt,1351jogs"
[1] "161011_mr_proc.txt, 161011_cal_periods.txt, 161011_cal_param.txt,1341jogs"
[1] "161012_mr_proc.txt, 161012_cal_periods.txt, 161012_cal_param.txt,1334jogs"
[1] "161013_mr_proc.txt, 161013_cal_periods.txt, 161013_cal_param.txt,1328jogs"
[1] "161014_mr_proc.txt, 161014_cal_periods.txt, 161014_cal_param.txt,1346jogs"
[1] "161015_mr_proc.txt, 161015_cal_periods.txt, 161015_cal_param.txt,1137jogs"
[1] "161016_mr_proc.txt, 161016_cal_periods.txt, 161016_cal_param.txt,1205jogs"
[1] "161017_mr_proc.txt, 161017_cal_periods.txt, 161017_cal_param.txt,980jogs"
[1] "161002" "161017" "d276"   "d291"  
[1] "Calculating derived concentration values"
[1] "2017-09-20 22:55:36 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.994, ave o2scale2 = 0.818"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-09-20 22:55:59 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-09-20 22:56:27 MDT"
[1] "2017-09-20 22:56:33 MDT"
[1] "Reading in cylinder log"
Read 74 records
[1] "Finding cylinder IDs"
Read 428 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.48 O2 = -529.8"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.97 O2 = -656.4"
[1] "position 4 cylinder CB08905 description: LT CO2 = 404.14 O2 = -661.5"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1609 Valve transient for  Line 1 after Cal = -0.65 , -0.22 , 0.02 , 0.01 , 0.01 n = 70"
[1] "1609 Valve transient for  Line 1 after HS = -1.21 , -0.65 , 0.04 , 0.02 , 0.03 n = 23"
[1] "1609 Valve transient for  Line 1 after MS = -0.71 , -0.3 , -0.01 , 0 , 0 n = 33"
[1] "1609 Valve transient for  Line 1 after LT = 1.5 , 1.11 , 0.45 , 0.02 , 0.01 n = 14"
[1] "1609 Valve transient for  HS after Line 1 = 0.5 , 0.27 , 0.01 , 0.01 , 0.01 n = 15"
[1] "1609 Valve transient for  HS after MS = 1.1 , 0.56 , 0.01 , 0 , 0.01 n = 1"
[1] "1609 Valve transient for  HS after LS = 2.81 , 1.42 , 0.02 , 0.01 , 0.01 n = 16"
[1] "1609 Valve transient for  MS after Line 1 = -0.01 , 0 , 0 , NA , NA n = 1"
[1] "1609 Valve transient for  MS after LS = 1.74 , 0.89 , 0.01 , 0 , 0 n = 13"
[1] "1609 Valve transient for  MS after LT = 1.5 , 0.75 , 0.01 , 0 , 0 n = 6"
[1] "1609 Valve transient for  LS after Line 1 = -0.45 , -0.22 , 0 , 0 , 0 n = 18"
[1] "1609 Valve transient for  LS after HS = -3.09 , -1.55 , -0.02 , -0.01 , 0 n = 19"
[1] "1609 Valve transient for  LT after HS = -0.58 , -0.3 , -0.02 , -0.01 , 0 n = 6"
[1] "1609 Valve transient for  LT after LS = 0.1 , 0.06 , 0.02 , 0.02 , 0.01 n = 8"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "606 out of 7340 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "6734 out of 16370 1-min values rejected as stack air"
[1] "6734 out of 16370 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1609loxy.d280"
[1] "LMG1609loxy.d281"
[1] "LMG1609loxy.d282"
[1] "LMG1609loxy.d283"
[1] "LMG1609loxy.d288"
[1] "LMG1609loxy.d289"
[1] "LMG1609loxy.d290"
[1] "LMG1609loxy.d291"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 1.1450382
 [2,]  97.5 0.9541985
 [3,] 102.5 1.1450382
 [4,] 107.5 0.9541985
 [5,] 112.5 1.1450382
 [6,] 117.5 0.5725191
 [7,] 122.5 1.3358779
 [8,] 127.5 0.9541985
 [9,] 132.5 1.7175573
[10,] 137.5 1.1450382
[11,] 142.5 2.0992366
[12,] 147.5 1.7175573
[13,] 152.5 2.2900763
[14,] 157.5 1.3358779
[15,] 162.5 1.5267176
[16,] 167.5 1.7175573
[17,] 172.5 1.1450382
[18,] 177.5 0.9541985
[19,] 182.5 1.3358779
[20,] 187.5 0.9541985
[21,] 192.5 1.3358779
[22,] 197.5 0.3816794
[23,] 202.5 0.7633588
[24,] 207.5 0.7633588
[25,] 212.5 0.7633588
[26,] 217.5 0.5725191
[27,] 222.5 0.7633588
[28,] 227.5 0.7633588
[29,] 232.5 0.1908397
[30,] 237.5 1.1450382
[31,] 242.5 1.3358779
[32,] 247.5 1.3358779
[33,] 252.5 1.3358779
[34,] 257.5 1.9083969
[35,] 262.5 0.5725191
[36,] 267.5 1.1450382
[37,] 272.5 0.5725191
[38,] 277.5 0.9541985
[39,] 282.5 1.1450382
[40,] 287.5 2.8625954
[41,] 292.5 3.6259542
[42,] 297.5 1.3358779
[43,] 302.5 1.5267176
[44,] 307.5 1.3358779
[45,] 312.5 1.3358779
[46,] 317.5 0.5725191
[47,] 322.5 0.7633588
[48,] 327.5 0.9541985
[49,] 332.5 0.7633588
[50,] 337.5 1.1450382
[51,] 342.5 1.9083969
[52,] 347.5 4.3893130
[53,] 352.5 2.0992366
[54,] 357.5 0.7633588
[55,] 362.5 0.1908397
[56,] 367.5 0.1908397
[57,] 372.5 1.3358779
[58,] 377.5 2.2900763
[59,] 382.5 2.0992366
[60,] 387.5 1.3358779
[61,] 392.5 1.9083969
[62,] 397.5 2.4809160
[63,] 402.5 1.9083969
[64,] 407.5 2.4809160
[65,] 412.5 0.9541985
[66,] 417.5 0.9541985
[67,] 422.5 1.3358779
[68,] 427.5 0.3816794
[69,] 432.5 0.9541985
[70,] 437.5 0.5725191
[71,] 442.5 0.9541985
[72,] 447.5 0.9541985
       [,1]      [,2]
 [1,]  92.5 0.0000000
 [2,]  97.5 0.0000000
 [3,] 102.5 0.1908397
 [4,] 107.5 0.7633588
 [5,] 132.5 0.0000000
 [6,] 137.5 0.1908397
 [7,] 147.5 0.1908397
 [8,] 157.5 0.0000000
 [9,] 177.5 0.3816794
[10,] 192.5 0.1908397
[11,] 207.5 0.1908397
[12,] 212.5 0.1908397
[13,] 217.5 0.1908397
[14,] 227.5 0.0000000
[15,] 232.5 0.1908397
[16,] 247.5 0.1908397
[17,] 262.5 0.1908397
[18,] 277.5 0.1908397
[19,] 292.5 0.1908397
[20,] 302.5 0.1908397
[21,] 307.5 0.1908397
[22,] 332.5 0.9541985
[23,] 337.5 0.1908397
[24,] 387.5 0.1908397
[25,] 397.5 0.1908397
[26,] 407.5 0.1908397
[27,] 412.5 0.1908397
[28,] 427.5 0.1908397
[29,] 442.5 0.1908397
[30,] 447.5 0.1908397
      [,1]      [,2]
[1,] 107.5 0.1908397
[2,] 112.5 0.9541985
[3,] 117.5 0.0000000
     [,1] [,2]
[1] "making cruise html"
[1] "2017-09-20 22:56:58 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"