[1] "2025-04-30 01:34:46 MDT" [1] "1605" "160617" "d169" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160617a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 50099 63 [1] 50099 [1] 50099 [1] "testing skipping spike filter" [1] 50099 [1] 50099 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:34:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.945, ave o2scale2 = 0.796" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "9 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.945, ave o2scale2 = 0.796" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:34:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:34:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:34:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:34:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 823 0 TRUE" [1] "Removed 711 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:34:58 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 404.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 4 13 0.9244961 0.9307592 0.9297158 3 -9.222266 195.58890 3 2 14 23 0.9314546 0.9377176 0.9352833 3 -18.385211 210.93045 4 4 24 33 0.9384132 0.9446725 0.9422381 3 4.341109 91.25281 5 5 34 43 0.9453681 0.9516273 0.9505839 NA -8.381750 163.84771 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.056494 1.251921 -0.0005121058 3.778497 0.001724867 7.265273 3 1.056457 1.251886 -0.0016589462 0.319006 0.005853393 3.014757 4 1.056427 1.251879 0.0023118407 1.039741 0.006391152 3.887762 5 1.056661 1.252157 -0.0049914729 1.472857 0.003535534 2.729037 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.059 co2l1 = 0.946 co2l0 = -0.014" [1] "co2l0 = -135.78 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "6 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 50 1-min values rejected as stack air" [1] "14 out of 50 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"