[1] "2025-04-30 01:33:53 MDT" [1] "1605" "160615" "d167" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160615a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 80436 63 [1] 80436 [1] 80436 [1] "testing skipping spike filter" [1] 80436 [1] 80436 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:33:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.955, ave o2scale2 = 0.805" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "128 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.955, ave o2scale2 = 0.805" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "129 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:33:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:33:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:34:13 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:34:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 129 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1207 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:34:16 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 398.27 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.66 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.001897280 0.007461053 0.005374727 3 -18.553911 209.74822 2 4 10 19 0.008156481 0.014416522 0.011982263 3 4.159703 93.82448 3 3 20 29 0.015112095 0.021371528 0.020328262 3 -9.388086 195.30476 5 4 300 308 0.209883247 0.216143056 0.213758222 2 4.118108 94.99552 6 2 309 314 0.219620370 0.223097569 0.222054521 2 -18.621422 203.30217 8 2 511 520 0.418548293 0.424811343 0.422377051 3 -18.647547 202.95055 9 4 521 529 0.425506800 0.431769560 0.429385032 3 4.085858 90.58933 10 3 530 538 0.432464873 0.438724132 0.438028752 3 -9.471407 200.76089 12 4 780 789 0.627225694 0.633485069 0.631050687 2 4.082125 92.80173 13 2 790 799 0.634180556 0.640439815 0.638005657 2 -18.648437 208.33044 15 2 1032 1041 0.877576389 0.883835446 0.881401143 3 -18.684180 209.34448 16 4 1042 1051 0.884530874 0.890791030 0.888356264 3 4.044812 96.53354 17 5 1052 1061 0.891489931 0.897749653 0.896706503 NA -8.725281 159.74174 18 3 1062 1071 0.898445226 0.904704861 0.903661299 3 -9.511461 196.19447 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.055310 1.251649 1.098848e-03 0.43091108 0.002665818 1.2799813 2 1.055177 1.251517 1.417411e-03 -0.16287245 0.006523203 2.0143805 3 1.055213 1.251539 8.050917e-06 -0.35095274 0.002470798 1.8385951 5 1.050136 1.245881 -2.576013e-03 0.22676633 0.007937725 3.0994611 6 1.049944 1.245653 5.680048e-04 -1.87675387 0.002009985 3.3376192 8 1.046200 1.241584 9.346336e-04 1.74666953 0.004367819 4.6769841 9 1.046206 1.241577 2.275014e-04 -0.44209813 0.002230309 4.7177604 10 1.046340 1.241601 1.392070e-03 0.07216070 0.003659027 2.3364450 12 1.044314 1.239441 1.573585e-03 -0.77940304 0.006576558 2.3620859 13 1.043947 1.239013 -2.702990e-03 1.06120521 0.008228394 4.3119936 15 1.042136 1.236872 -1.743617e-03 -1.67436214 0.004636501 4.5509597 16 1.042111 1.236789 4.011528e-03 1.12011440 0.010316747 3.1097484 17 1.041846 1.236473 -7.678222e-03 0.09623556 0.005435883 0.6703441 18 1.041778 1.236420 -9.010817e-04 -0.07843027 0.002947255 1.8543077 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.292 co2l1 = 0.946 co2l0 = -0.017" [1] "co2l0 = -137.21 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "159 out of 340 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "181 out of 1035 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "181 out of 1035 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"