[1] "2025-04-30 01:32:23 MDT" [1] "1605" "160612" "d164" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160612a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:32:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.962, ave o2scale2 = 0.811" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "59 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.962, ave o2scale2 = 0.811" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "59 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:32:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:32:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:32:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:32:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 59 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1170 row(s) with low FLSP" [1] "TEMP: 207 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:32:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 398.51 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 57.1 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 299.5 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 58 67 0.07993973 0.08620255 0.08376811 3 -19.171711 218.58786 3 4 68 77 0.08689815 0.09316325 0.09072746 3 3.587125 94.04162 4 5 78 87 0.09386039 0.10011953 0.09907650 NA -9.322781 156.66147 5 3 88 97 0.10081499 0.10707491 0.10603173 3 -10.010789 200.08158 7 4 116 124 0.28931291 0.29487731 0.29279056 2 3.613875 92.01094 8 2 125 142 0.29557292 0.50356123 0.41252134 2 -19.038336 209.03169 9 4 143 152 0.50425660 0.51051962 0.50808400 2 3.766344 93.50828 10 3 153 161 0.51121502 0.51677894 0.51608337 2 -9.795250 191.49978 11 4 162 170 0.70667729 0.71224112 0.71015484 2 3.882509 105.85165 12 2 171 188 0.71293652 0.92092202 0.82988416 2 -18.850414 209.78159 13 4 189 198 0.92161736 0.92788053 0.92544608 2 3.875484 90.49037 14 3 199 207 0.92857601 0.93414016 0.93344469 2 -9.692723 192.93310 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.028673 1.221752 -1.296191e-03 1.530916004 0.003429119 4.2242514 3 1.028674 1.221701 1.568554e-03 -0.037653825 0.005065641 4.2406326 4 1.028843 1.221791 -4.681453e-03 -1.673332973 0.003314563 3.7206747 5 1.028846 1.221743 -2.609803e-03 1.434601414 0.007827873 1.9095639 7 1.033544 1.226027 3.137660e-03 -0.703909695 0.006977456 1.8643192 8 1.040062 1.232691 4.794105e-04 0.014161653 0.072660196 2.8473070 9 1.045326 1.238115 2.296222e-03 -0.033645097 0.006344465 2.6674705 10 1.045780 1.238532 -6.975095e-04 -5.323636524 0.002180345 5.3542012 11 1.047852 1.241517 -1.306103e-03 -6.294626612 0.003035259 23.7467839 12 1.047536 1.241348 -2.793857e-05 -0.002683734 0.005420489 3.1081143 13 1.046999 1.240816 1.605903e-03 -1.232522041 0.006352002 3.4827486 14 1.046838 1.240578 -9.535199e-04 0.176634225 0.005223003 0.3729741 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.623 co2l1 = 0.947 co2l0 = -0.006" [1] "co2l0 = -137.32 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 63 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "0 out of 63 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"