[1] "2025-04-30 01:31:53 MDT" [1] "1605" "160611" "d163" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160611a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85998 63 [1] 85998 [1] 85998 [1] "testing skipping spike filter" [1] 85998 [1] 85998 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:31:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.955, ave o2scale2 = 0.805" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "70 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.955, ave o2scale2 = 0.805" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "69 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:31:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:31:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:32:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:32:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 69 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 978 row(s) with low FLSP" [1] "TEMP: 383 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:32:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 402.52 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 34.61 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 299.51 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.03751968 0.04308733 0.0409994 2 3.914187 95.55950 2 2 10 27 0.04378264 0.25177633 0.1607359 2 -18.821727 207.90840 3 4 28 37 0.25247170 0.25873495 0.2562987 2 3.897641 90.11044 4 3 38 46 0.25943056 0.26499771 0.2643024 2 -9.684438 195.62187 5 4 47 55 0.45488203 0.46044638 0.4583599 2 3.859188 90.33184 6 2 56 64 0.46114175 0.46670527 0.4646190 2 -18.883946 206.17273 8 2 135 143 0.66326146 0.66882870 0.6667397 3 -18.895911 206.78871 9 4 144 153 0.66952428 0.67578704 0.6733509 3 3.842594 93.28540 10 3 154 163 0.67648264 0.68274537 0.6817022 3 -9.731117 193.31073 12 4 310 316 0.87194523 0.87611973 0.8747289 2 3.728975 90.63291 13 2 317 325 0.87820605 0.88377069 0.8816839 2 -19.001821 206.95479 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.053239 1.247978 -1.470033e-03 -0.028982477 0.004115836 2.0541274 2 1.052958 1.247570 -7.854092e-05 -0.003035055 0.012276160 3.0550609 3 1.052637 1.247075 1.217380e-03 0.408757268 0.004503936 3.3733465 4 1.052765 1.247095 1.055157e-03 -1.799651596 0.002778264 1.8335542 5 1.052026 1.246662 -1.938486e-04 -1.618595234 0.003172760 5.0373452 6 1.052044 1.246608 -1.239372e-03 -0.870956958 0.006106203 3.9569644 8 1.048797 1.243550 -1.075542e-03 -0.543408797 0.002405467 2.7712109 9 1.048485 1.243098 -8.379003e-04 -0.116904269 0.006267743 2.3297666 10 1.048220 1.242794 1.449317e-03 0.595606801 0.004853482 0.8251304 12 1.038370 1.232142 2.059058e-04 -4.543476386 0.001352515 7.2322289 13 1.037817 1.231450 -1.365999e-03 0.077803299 0.003697625 1.7934363 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.535 co2l1 = 0.946 co2l0 = -0.012" [1] "co2l0 = -136.46 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "45 out of 254 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "45 out of 254 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"