[1] "2025-04-30 01:31:21 MDT" [1] "1605" "160610" "d162" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160610a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:31:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.949, ave o2scale2 = 0.801" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.949, ave o2scale2 = 0.801" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:31:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:31:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:31:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:31:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1236 row(s) with low FLSP" [1] "TEMP: 178 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:31:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 391.79 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.15 minutes" [1] "Average Cal: 61.3 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 299.51 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.0009843852 0.006646904 0.004560264 2 3.977304 92.98883 2 3 10 18 0.0073422743 0.012906221 0.012210639 2 -9.566607 191.73915 3 4 19 27 0.2028084491 0.208372280 0.206285855 2 3.934000 96.14055 4 2 28 45 0.2090678241 0.417049971 0.326014504 2 -18.824203 207.33080 5 4 46 55 0.4177453993 0.424005179 0.421570652 2 3.876953 93.98632 6 3 56 64 0.4247004919 0.430267882 0.429570206 2 -9.696313 196.49410 7 4 65 73 0.6201485822 0.625712211 0.623625967 2 3.907464 92.07277 8 2 74 91 0.6264075810 0.834397251 0.743358277 2 -18.795703 208.82468 9 4 92 101 0.8350926794 0.841352633 0.838918294 2 3.947898 91.90308 10 5 102 111 0.8420481771 0.848308073 0.847264959 NA -8.910469 160.38384 11 3 112 120 0.8490034722 0.854567795 0.853872309 2 -9.611295 195.21445 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.059838 1.254965 0.0026721246 0.08375892 0.006121005 1.441030 2 1.059945 1.255003 0.0011300307 -1.82812719 0.003472308 2.125063 3 1.054564 1.250924 0.0004546839 1.79302245 0.001697885 8.759922 4 1.052385 1.248813 -0.0001913130 0.01978840 0.029253655 6.977532 5 1.050643 1.246520 0.0002242981 0.19768528 0.003567079 3.922740 6 1.050639 1.246406 -0.0012002563 -1.80156078 0.004360989 3.317626 7 1.053966 1.248703 0.0014219153 0.63693100 0.003647355 4.606528 8 1.055388 1.250172 0.0001048860 0.01481087 0.016652413 3.562049 9 1.056507 1.251278 0.0005386004 -0.15063158 0.003491689 2.154656 10 1.056721 1.251486 -0.0065529436 2.65785668 0.004640388 3.579174 11 1.056695 1.251384 -0.0004657448 -1.62559443 0.004791175 1.762792 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.454 co2l1 = 0.948 co2l0 = 0" [1] "co2l0 = -137.2 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "8 out of 18 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "10 out of 48 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "10 out of 48 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"