[1] "2025-04-30 01:30:48 MDT" [1] "1605" "160609" "d161" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160609a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:30:52 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.94, ave o2scale2 = 0.794" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "38 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.94, ave o2scale2 = 0.794" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:30:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:30:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:31:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:31:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1270 row(s) with low FLSP" [1] "TEMP: 129 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:31:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 413 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.51 minutes" [1] "Average Cal: 66.62 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 299.53 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.1593990 0.1649628 0.1628762 3 -18.607027 209.25620 2 4 10 18 0.1663535 0.1719178 0.1698312 3 4.112714 94.45058 3 3 19 27 0.1726135 0.1781783 0.1774820 3 -9.449723 192.51908 4 4 28 36 0.3680659 0.3736303 0.3715432 2 4.104741 92.05419 5 2 37 54 0.3743257 0.5823229 0.4912789 2 -18.634781 209.78744 6 4 55 64 0.5830185 0.5892813 0.5868452 2 4.062391 95.50646 7 5 65 74 0.5899769 0.5962365 0.5951931 NA -8.758375 158.69365 8 3 75 84 0.5969317 0.6031910 0.6021477 2 -9.490336 192.32100 10 4 103 111 0.7854269 0.7909904 0.7889039 2 4.022134 91.25861 11 2 112 129 0.7916859 0.9996921 0.9086446 2 -18.720168 210.11969 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.067315 1.262667 -0.0005215178 -0.18362553 0.003119758 1.4447454 2 1.067520 1.262814 0.0011099244 1.24349034 0.005194255 3.5467193 3 1.067573 1.262754 -0.0018675161 1.23152765 0.004388055 1.8731585 4 1.066665 1.261963 0.0002230356 -1.44294156 0.003712561 3.6591493 5 1.065860 1.261197 -0.0001116793 0.02247515 0.018463308 5.9301908 6 1.064903 1.260192 0.0019263987 0.07687846 0.005779307 1.6737391 7 1.064741 1.259979 -0.0059890201 -1.80805040 0.004242641 3.1561033 8 1.064497 1.259686 -0.0008923963 -0.35564608 0.003418688 0.8438702 10 1.062983 1.258168 0.0002875471 -0.89450025 0.001729203 3.0018985 11 1.061366 1.256531 -0.0002053490 -0.01216512 0.031370117 3.6914026 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.318 co2l1 = 0.947 co2l0 = -0.013" [1] "co2l0 = -137.1 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 1 5-value periods OK w SD < 0.1 ppm" [1] "0 out of 8 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "8 out of 8 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "8 out of 8 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"