[1] "2025-04-30 01:30:19 MDT" [1] "1605" "160608" "d160" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160608a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:30:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.937, ave o2scale2 = 0.792" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "186 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.937, ave o2scale2 = 0.792" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "186 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:30:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:30:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:30:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:30:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 186 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 329 row(s) with low FLSP" [1] "TEMP: 921 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:30:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 406.12 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 7.86 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 141 150 0.1152928 0.1215521 0.1191179 2 4.107273 95.19767 3 2 151 160 0.1222477 0.1285072 0.1260729 2 -18.605445 206.04993 5 2 419 427 0.3239787 0.3302378 0.3279527 2 -18.625964 209.40939 6 4 428 434 0.3309332 0.3371933 0.3345504 2 4.098438 89.76654 10 4 678 684 0.5333461 0.5389102 0.5369628 2 4.096388 91.03416 11 2 685 694 0.5396056 0.5458648 0.5434307 2 -18.620859 209.79110 13 2 884 889 0.7441107 0.7475920 0.7465472 2 -18.603984 207.41956 14 4 890 899 0.7482873 0.7545505 0.7521147 2 4.107461 96.49871 16 4 904 912 0.9507154 0.9562801 0.9541933 2 4.100705 92.34498 17 2 913 921 0.9569756 0.9625393 0.9604527 2 -18.611366 206.67303 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.066322 1.261050 0.0006589805 0.79759348 0.004613516 3.817706 3 1.066321 1.261058 -0.0026453441 1.44655499 0.008496351 3.923574 5 1.067307 1.261951 -0.0026730640 -1.93880362 0.007256181 7.739706 6 1.067364 1.261959 0.0022871253 -2.08034031 0.008812832 8.273376 10 1.066870 1.261533 0.0006003387 1.04410890 0.001903636 6.555890 11 1.067071 1.261792 -0.0010715141 2.57328092 0.008151588 7.423475 13 1.069087 1.264169 -0.0005913287 -0.67662825 0.001177452 2.895116 14 1.069104 1.264156 0.0022540149 -1.17093900 0.008225880 3.930819 16 1.069173 1.264424 0.0027053272 1.69210423 0.006101007 4.222368 17 1.069270 1.264473 -0.0039112687 0.08411119 0.009808348 1.901834 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.295 co2l1 = 0.947 co2l0 = 0" [1] "co2l0 = -136.79 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "12 out of 98 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "86 out of 793 1-min values rejected as stack air" [1] "86 out of 793 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"