[1] "2025-04-30 01:29:12 MDT" [1] "1605" "160606" "d158" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160606a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:29:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.931, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.931, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:29:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:29:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:29:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:29:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1435 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:29:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 402.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 40 49 0.02846965 0.03473695 0.03229927 2 4.269469 96.33205 3 2 50 59 0.03543247 0.04169170 0.03925745 2 -18.450367 206.08410 6 2 340 349 0.23714470 0.24340394 0.24096985 3 -18.454688 206.97316 7 4 350 359 0.24409954 0.25036236 0.24792826 3 4.245445 89.46426 8 3 360 369 0.25105790 0.25731829 0.25627496 3 -9.293055 199.54489 10 4 640 649 0.44581366 0.45207292 0.44963877 2 4.222125 91.32573 11 2 650 659 0.45276852 0.45903125 0.45659486 2 -18.482148 207.82601 13 2 940 949 0.65448727 0.66074647 0.65831226 3 -18.484719 207.74667 14 4 950 959 0.66144190 0.66770122 0.66526702 3 4.238812 92.24612 15 3 960 969 0.66839661 0.67465966 0.67361632 3 -9.319594 194.94337 17 4 1239 1248 0.86318640 0.86944627 0.86701211 2 4.226984 92.42053 18 2 1249 1258 0.87014201 0.87640127 0.87396699 2 -18.483062 206.93373 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.073896 1.268362 1.195386e-03 -0.59935375 0.004208171 2.463101 3 1.073974 1.268449 -3.586027e-03 0.16243940 0.010988094 1.756055 6 1.074737 1.269518 1.218105e-04 0.40684872 0.004433789 2.358599 7 1.074670 1.269429 3.294865e-03 -0.41046846 0.008349203 2.997586 8 1.074830 1.269618 -2.839720e-03 2.22761810 0.007523508 2.941775 10 1.074722 1.269680 -8.945654e-04 -0.69266096 0.004382010 2.866921 11 1.074729 1.269688 -7.066299e-04 0.05991685 0.005611784 2.130664 13 1.074932 1.270045 1.637263e-05 -0.04146118 0.002162226 3.628762 14 1.074796 1.269895 5.171059e-03 1.04659577 0.012898427 2.955813 15 1.074686 1.269770 1.408203e-04 -2.78189213 0.003173376 3.660616 17 1.074711 1.269883 2.883994e-03 -0.17788218 0.007531537 1.989806 18 1.074809 1.270001 -2.689150e-03 -0.52654386 0.007640646 1.657499 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.158 co2l1 = 0.947 co2l0 = -0.016" [1] "co2l0 = -136.63 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "80 out of 215 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "135 out of 1276 1-min values rejected as stack air" [1] "132 out of 1062 Line 1 1-min values rejected as stack air" [1] "3 out of 214 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"