[1] "2025-04-30 01:28:39 MDT" [1] "1605" "160605" "d157" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160605a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:28:43 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.932, ave o2scale2 = 0.79" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.932, ave o2scale2 = 0.79" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:28:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:28:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:29:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:29:02 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:29:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 402.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.78 minutes" [1] "Shortest Cal: 6.15 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 5 4 278 287 0.1937222 0.1999816 0.1975475 2 4.296234 92.09359 6 2 288 297 0.2006771 0.2069364 0.2045023 2 -18.417453 210.10611 9 2 578 587 0.4024005 0.4086598 0.4062257 3 -18.425906 206.44010 10 4 588 597 0.4093553 0.4156150 0.4131807 3 4.293141 93.78712 11 3 598 607 0.4163104 0.4225696 0.4215263 3 -9.255773 191.27147 13 4 878 887 0.6110770 0.6173368 0.6149023 2 4.278836 91.69622 14 2 888 897 0.6180322 0.6242951 0.6218593 2 -18.436875 209.19843 16 2 1178 1187 0.8197746 0.8260358 0.8236004 3 -18.449500 213.26078 17 4 1188 1197 0.8267341 0.8329977 0.8305607 3 4.261297 88.65719 18 5 1198 1207 0.8336935 0.8399572 0.8389138 NA -8.450594 158.18615 19 3 1208 1217 0.8406527 0.8469122 0.8458690 3 -9.293328 198.65760 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 5 1.071792 1.265471 0.0011753201 0.44899088 0.0031581722 2.3519537 6 1.071909 1.265584 -0.0041340223 0.03265206 0.0111806269 2.5246548 9 1.072296 1.266155 0.0002704725 -0.11002528 0.0025444705 2.5099754 10 1.072240 1.266086 0.0018705205 0.52637899 0.0051215962 2.6375488 11 1.072282 1.266131 0.0005966073 0.11486866 0.0022655557 0.4489037 13 1.072515 1.266546 0.0003156809 0.18867915 0.0044557519 2.1067629 14 1.072599 1.266656 -0.0021061510 0.91817944 0.0057935078 3.4006732 16 1.073207 1.267439 -0.0010294931 1.68726436 0.0039338844 5.0670405 17 1.073280 1.267514 0.0011418566 1.78058945 0.0037121227 4.6667524 18 1.073253 1.267501 -0.0008111818 -0.50795088 0.0005745243 1.3286616 19 1.073243 1.267503 -0.0002451733 -0.18540201 0.0034109772 0.5203353 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 402.118 co2l1 = 0.947 co2l0 = -0.016" [1] "co2l0 = -136.02 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "116 out of 349 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "233 out of 1269 1-min values rejected as stack air" [1] "226 out of 939 Line 1 1-min values rejected as stack air" [1] "7 out of 330 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"