[1] "2025-04-30 01:28:17 MDT" [1] "1605" "160604" "d156" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160604a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85218 63 [1] 85218 [1] 85218 [1] "testing skipping spike filter" [1] 85218 [1] 85218 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:28:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.932, ave o2scale2 = 0.79" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "44 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.932, ave o2scale2 = 0.79" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "43 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:28:22 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:28:22 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:28:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:28:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 3 row(s) with variable TFCELL" [1] "TEMP: 1372 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:28:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.12 co2off = 403.08 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.01 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 236 245 0.1652216 0.1714849 0.1690496 2 8.435094 135.33959 3 2 246 255 0.1721803 0.1784398 0.1760054 2 -14.345250 252.17343 5 2 536 545 0.3739132 0.3801761 0.3777414 3 -14.408516 250.88958 6 4 546 555 0.3808715 0.3871315 0.3846969 3 8.365078 140.06168 7 5 556 565 0.3878269 0.3940857 0.3930427 NA -4.443969 206.19129 8 3 566 575 0.3947812 0.4010411 0.3999980 3 -5.225344 236.73449 15 4 1056 1065 0.7763530 0.7826123 0.7801782 2 4.355883 85.96932 16 2 1066 1075 0.7833078 0.7895671 0.7871331 2 -18.355258 199.57493 19 2 1351 1360 0.9850338 0.9912970 0.9888605 2 -18.395273 206.14865 20 4 1361 1370 0.9919923 0.9982523 0.9958176 2 4.321516 93.18437 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.075712 1.269123 -2.487321e-05 -0.58039086 0.002067229 2.0354770 3 1.075798 1.269218 -2.126142e-03 -0.08407816 0.006873620 2.7428950 5 1.072926 1.266442 -2.332308e-03 -0.16284257 0.007138361 1.8202292 6 1.072858 1.266331 3.201906e-03 -0.31671835 0.007938572 1.4280405 7 1.072805 1.266292 -3.558052e-03 0.50041649 0.002519068 0.7929278 8 1.072751 1.266224 -3.669481e-04 1.58518832 0.001941384 2.2925599 15 1.070394 1.263845 -1.561009e-03 -6.09765731 0.005255677 19.3370539 16 1.070648 1.264084 9.413757e-04 -3.93636657 0.007516903 18.4129247 19 1.071526 1.265035 -9.842356e-04 0.33718574 0.005117584 1.4857565 20 1.071654 1.265168 8.007928e-04 1.38481609 0.002513968 3.9721690 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.164 co2l1 = 0.945 co2l0 = -0.077" [1] "co2l0 = -141.69 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "104 out of 240 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "136 out of 1214 1-min values rejected as stack air" [1] "125 out of 1061 Line 1 1-min values rejected as stack air" [1] "11 out of 153 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"