[1] "2025-04-30 01:27:44 MDT" [1] "1605" "160603" "d155" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160603a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:27:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.932, ave o2scale2 = 0.79" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.932, ave o2scale2 = 0.79" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:27:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:27:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:28:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:28:09 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:28:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 398.25 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 174 183 0.1217933 0.1280525 0.1256184 3 -14.418242 253.4094 3 4 184 193 0.1287485 0.1350077 0.1325735 3 8.398930 135.4642 4 5 194 203 0.1357032 0.1419630 0.1409197 NA -4.393250 204.4884 5 3 204 213 0.1426614 0.1489283 0.1478798 3 -5.206992 239.0487 7 4 474 483 0.3304699 0.3367292 0.3342949 2 8.407773 133.5331 8 2 484 493 0.3374247 0.3436841 0.3412500 2 -14.389242 252.2405 10 2 774 783 0.5391390 0.5453982 0.5429640 3 -14.345867 251.0022 11 4 784 793 0.5460937 0.5523530 0.5499188 3 8.425406 137.4196 12 3 794 803 0.5530499 0.5593113 0.5582680 3 -5.172750 242.3959 14 4 1074 1083 0.7478414 0.7541012 0.7516670 2 8.452422 135.4627 15 2 1084 1093 0.7547965 0.7610595 0.7586246 2 -14.321180 254.5478 17 2 1374 1383 0.9565268 0.9627870 0.9603527 3 -14.322922 251.5530 18 4 1384 1393 0.9634825 0.9697420 0.9673078 3 8.455742 139.1340 19 3 1394 1403 0.9704375 0.9766972 0.9756541 3 -5.147664 240.9256 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.068178 1.260236 -0.0014124304 1.206537003 0.005995482 3.6873261 3 1.068179 1.260233 0.0041298312 -0.593271472 0.011352432 2.1471545 4 1.068420 1.260499 -0.0017470882 -1.000510103 0.001237437 1.2965881 5 1.068589 1.260666 0.0020269145 -0.001067598 0.005195985 0.5638917 7 1.070752 1.263160 -0.0005625846 -0.208492890 0.006049271 1.8538375 8 1.070962 1.263407 0.0001493276 -0.283893418 0.002963023 3.7186781 10 1.074723 1.267666 -0.0005832413 0.716405978 0.002260748 3.2639161 11 1.074675 1.267613 0.0013582760 0.547714392 0.006248482 1.9028714 12 1.074829 1.267815 0.0011248241 0.642776825 0.003063866 0.8471619 14 1.075891 1.269117 0.0017220789 -1.028507733 0.005224935 2.8199890 15 1.076041 1.269315 -0.0019267437 0.170043887 0.005458083 4.8040703 17 1.076919 1.270401 -0.0004710650 0.237129159 0.002029567 4.3878644 18 1.076821 1.270295 0.0021107611 0.700658650 0.006148682 2.0139452 19 1.076838 1.270348 -0.0021343698 -0.170494927 0.005375201 0.3592676 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.218 co2l1 = 0.944 co2l0 = -0.025" [1] "co2l0 = -145.94 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1254 1-min values rejected as stack air" [1] "0 out of 1254 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"