[1] "2025-04-30 01:27:12 MDT" [1] "1605" "160602" "d154" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160602a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:27:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.939, ave o2scale2 = 0.796" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.939, ave o2scale2 = 0.796" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:27:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:27:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:27:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:27:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1433 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:27:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 398.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 110 119 0.07834823 0.08460764 0.08217313 2 8.417445 148.7781 3 2 120 129 0.08530324 0.09156597 0.08912953 2 -14.384258 255.5252 5 2 410 419 0.28703582 0.29329861 0.29086196 3 -14.415906 246.7822 6 4 420 429 0.29399418 0.30025347 0.29781907 3 8.380867 128.5112 7 3 430 439 0.30094896 0.30720816 0.30616490 3 -5.219492 236.0838 9 4 709 718 0.49573267 0.50199190 0.49955786 2 8.379133 136.0415 10 2 719 728 0.50268750 0.50894696 0.50651272 2 -14.407367 249.3508 12 2 1009 1018 0.70440075 0.71066667 0.70823213 3 -14.451359 250.6703 13 4 1019 1028 0.71136227 0.71762127 0.71518709 3 8.344492 138.1795 14 3 1029 1038 0.71831664 0.72457630 0.72353306 3 -5.263805 237.6491 16 4 1309 1318 0.91310069 0.91936438 0.91692704 2 8.349023 138.9744 17 2 1319 1328 0.92005981 0.92632292 0.92388672 2 -14.456992 251.7125 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.064702 1.256496 1.395886e-03 -1.153114122 0.005178018 10.837121 3 1.064665 1.256471 -1.942391e-03 1.294623668 0.005511396 3.904135 5 1.065160 1.257027 1.143915e-03 -0.008886619 0.004256429 4.897210 6 1.065094 1.256938 4.163917e-03 -2.848647589 0.011106598 8.980834 7 1.065195 1.257064 7.912816e-04 1.507894516 0.004958583 2.003284 9 1.066735 1.258121 -1.804953e-04 -0.490181250 0.002640143 1.895856 10 1.066915 1.258344 -2.740639e-04 -0.072272670 0.002944319 1.353777 12 1.064487 1.256330 5.423970e-04 -0.667948554 0.004227059 1.902685 13 1.064370 1.256221 -9.740376e-05 -0.880757526 0.004809013 2.681213 14 1.064379 1.256234 1.883476e-03 0.314235705 0.005677969 0.982717 16 1.065280 1.257080 -8.496908e-04 0.564952436 0.005689014 2.014468 17 1.065496 1.257316 -1.351009e-03 0.633941251 0.006538130 3.317866 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.274 co2l1 = 0.943 co2l0 = -0.028" [1] "co2l0 = -147.37 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "22 out of 105 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "83 out of 1276 1-min values rejected as stack air" [1] "83 out of 1276 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"