[1] "2025-04-30 01:25:33 MDT" [1] "1605" "160528" "d149" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160528a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 59252 63 [1] 59252 [1] 59252 [1] "testing skipping spike filter" [1] 59252 [1] 59252 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:25:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.918, ave o2scale2 = 0.781" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "50 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.918, ave o2scale2 = 0.781" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "52 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:25:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:25:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:25:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:25:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 52 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 24 row(s) with variable TFCELL" [1] "TEMP: 910 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:25:45 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 397.26 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 209 218 0.1471504 0.1534093 0.1509751 2 9.480414 134.3077 1.088154 3 2 219 228 0.1541050 0.1603664 0.1579303 2 -13.264789 252.3335 1.088388 5 2 509 518 0.3559955 0.3622943 0.3598462 3 -13.316727 251.6673 1.088828 6 4 519 528 0.3629898 0.3692548 0.3668208 3 9.452445 136.5333 1.089125 7 3 529 538 0.3699503 0.3762099 0.3751668 3 -4.140633 236.6801 1.089057 jfcv2 co2slp o2slp co2sd o2sd 2 1.277807 0.0002370251 0.4793865 0.003434973 2.097374 3 1.278080 -0.0010505208 -0.6465013 0.006428169 2.842303 5 1.278797 -0.0005502096 0.8738901 0.003891230 4.481955 6 1.279142 0.0007438492 1.0815227 0.004529841 3.358558 7 1.279060 -0.0004346668 -6.2121315 0.002874891 8.614037 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.227 co2l1 = 0.945 co2l0 = -0.026" [1] "co2l0 = -145.88 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "51 out of 138 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "87 out of 843 1-min values rejected as stack air" [1] "87 out of 843 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"