[1] "2025-04-30 01:25:14 MDT" [1] "1605" "160527" "d148" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160527a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 69621 63 [1] 69621 [1] 69621 [1] "testing skipping spike filter" [1] 69621 [1] 69621 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:25:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.919, ave o2scale2 = 0.783" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.919, ave o2scale2 = 0.783" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:25:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:25:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:25:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:25:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 42 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 5 row(s) with variable TFCELL" [1] "TEMP: 1110 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:25:28 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 397.1 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.64 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 220 229 0.1565301 0.1627889 0.1603548 2 9.839664 137.8728 3 2 230 239 0.1634843 0.1697446 0.1673097 2 -12.951523 249.3346 8 4 722 731 0.7298056 0.7360673 0.7336320 2 9.585133 140.2918 9 2 732 741 0.7367627 0.7430256 0.7405893 2 -13.159172 257.0847 11 2 1022 1031 0.9384653 0.9447246 0.9422904 3 -13.212750 250.5025 12 4 1032 1041 0.9454203 0.9516836 0.9492460 3 9.538250 137.4224 13 3 1042 1051 0.9523790 0.9586379 0.9575948 3 -4.047320 236.5922 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.085480 1.274570 -0.0024153170 0.73719489 0.006032366 2.616371 3 1.085426 1.274504 -0.0006930342 1.11500967 0.006388548 4.809416 8 1.089317 1.278621 0.0002686732 0.07097328 0.007053640 10.236964 9 1.089370 1.278665 -0.0029377460 2.10330185 0.008741753 8.668547 11 1.088403 1.277834 -0.0007534144 -1.03226161 0.002760532 3.357793 12 1.088212 1.277611 -0.0004740166 0.81084117 0.005007249 3.939358 13 1.088107 1.277536 -0.0025343090 -0.73137995 0.006273922 1.760574 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.054 co2l1 = 0.945 co2l0 = -0.024" [1] "co2l0 = -147.2 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "37 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "188 out of 989 1-min values rejected as stack air" [1] "186 out of 815 Line 1 1-min values rejected as stack air" [1] "2 out of 174 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"