[1] "2025-04-30 01:24:52 MDT" [1] "1605" "160526" "d147" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160526a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84575 63 [1] 84575 [1] 84575 [1] "testing skipping spike filter" [1] 84575 [1] 84575 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:24:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.914, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.914, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "38 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:24:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:24:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:25:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:25:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 38 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1369 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:25:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 388.64 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.44 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 133 142 0.09610544 0.1023651 0.09993104 2 10.505227 135.7207 3 2 143 152 0.10306045 0.1093200 0.10688591 2 -12.268000 248.0579 6 2 432 441 0.30476959 0.3110289 0.30859458 3 -12.350336 250.1276 7 4 442 451 0.31172425 0.3179838 0.31554933 3 10.400203 135.4526 8 5 452 461 0.31867934 0.3249387 0.32389536 NA -2.373281 202.7880 9 3 462 471 0.32563426 0.3318941 0.33085033 3 -3.194039 233.3014 11 4 730 739 0.51342491 0.5196849 0.51725072 2 10.342633 133.8102 12 2 740 749 0.52038018 0.5266398 0.52420541 2 -12.447391 253.0764 16 2 1025 1034 0.72190081 0.7281609 0.72572636 3 -12.539500 252.6951 17 4 1035 1044 0.72885683 0.7351169 0.73268234 3 10.216852 137.9385 18 3 1045 1054 0.73581285 0.7420721 0.74102905 3 -3.361883 238.5544 22 4 1315 1324 0.96168024 0.9679449 0.96550831 1 9.881859 136.4884 23 5 1325 1334 0.96864068 0.9749246 0.97387698 NA -2.918156 194.9391 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.099184 1.289771 2.517814e-04 0.53568997 0.002854535 1.7512523 3 1.098951 1.289497 -3.772563e-03 0.94437057 0.010712559 2.9233131 6 1.096557 1.286634 -2.485038e-03 0.10015874 0.008158580 2.9121006 7 1.096366 1.286444 1.201894e-03 -0.88076263 0.004488048 3.5666141 8 1.096321 1.286395 -6.178233e-03 -0.49219863 0.004375223 0.8525271 9 1.096180 1.286246 4.828272e-05 1.06848200 0.003409372 1.9049026 11 1.094159 1.284190 1.280128e-03 0.81077552 0.003953473 2.6627198 12 1.094324 1.284370 -5.272812e-03 0.94535831 0.013803740 3.4572800 16 1.091858 1.281665 -2.712678e-03 0.09715913 0.006988830 2.3127941 17 1.091636 1.281410 1.113450e-03 0.35647108 0.004872474 3.0378521 18 1.091413 1.281147 3.588565e-04 0.19225411 0.001231306 0.4699327 22 1.087265 1.276325 2.077534e-03 2.31529609 0.007445767 8.5886714 23 1.087485 1.276590 -5.143353e-03 -1.80244394 0.003668116 2.9664425 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.473 co2l1 = 0.945 co2l0 = -0.027" [1] "co2l0 = -146.45 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "92 out of 397 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "305 out of 1177 1-min values rejected as stack air" [1] "268 out of 1013 Line 1 1-min values rejected as stack air" [1] "37 out of 164 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"