[1] "2025-04-30 01:24:18 MDT" [1] "1605" "160525" "d146" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160525a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:24:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.912, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "244 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.912, ave o2scale2 = 0.778" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "244 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:24:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:24:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:24:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:24:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 245 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1191 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:24:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 396.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.8 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 73 82 0.05254251 0.05880208 0.05636782 3 -12.065320 246.7787 3 4 83 92 0.05949769 0.06575694 0.06332261 3 10.698422 138.4094 4 5 93 102 0.06645255 0.07271181 0.07166853 NA -1.993125 204.5966 5 3 103 112 0.07341071 0.07967025 0.07862721 3 -2.904172 235.8233 7 4 368 377 0.26122454 0.26748736 0.26505302 2 10.665664 134.6414 8 2 378 387 0.26818287 0.27444291 0.27200858 2 -12.110367 253.7592 10 2 639 648 0.46989120 0.47615394 0.47372002 3 -12.214227 249.7301 11 4 649 658 0.47684957 0.48310885 0.48067500 3 10.562164 137.7877 12 3 659 668 0.48380446 0.49006366 0.48902048 3 -3.045055 229.1770 14 4 891 895 0.67860689 0.68278012 0.68208454 2 10.519917 141.3040 15 2 896 903 0.68556181 0.69182176 0.68961910 2 -12.253406 256.5211 18 4 1065 1070 0.89564725 0.90051620 0.89877758 2 10.490797 140.3972 19 3 1071 1075 0.90469308 0.90747457 0.90817021 2 -3.098854 197.9836 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.100102 1.288386 -2.333592e-03 -0.05044909 0.0065303581 6.582045 3 1.099924 1.288222 4.438941e-05 -0.77797311 0.0068224248 3.648842 4 1.100168 1.288526 7.487832e-04 2.70978325 0.0005303301 3.725496 5 1.100119 1.288494 -1.710316e-03 1.98748143 0.0047184987 3.877701 7 1.099873 1.288528 3.820171e-04 0.37581545 0.0042377630 1.592697 8 1.099604 1.288265 -4.496407e-03 0.01358979 0.0111832064 1.798479 10 1.095288 1.283781 -2.208951e-03 0.70813095 0.0055438529 4.129240 11 1.094844 1.283258 1.035553e-04 0.09923366 0.0058933923 1.064576 12 1.094896 1.283349 -1.208794e-03 -1.71986142 0.0056759043 3.551052 14 1.092561 1.280959 2.807907e-03 4.05290365 0.0031778858 4.059405 15 1.092436 1.280904 -3.623178e-04 2.24127492 0.0032458507 7.899878 18 1.095619 1.285163 3.188539e-03 0.53288873 0.0079868667 1.517341 19 1.096820 1.286661 1.061154e-03 -26.10382737 0.0012092310 28.517761 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.171 co2l1 = 0.945 co2l0 = -0.021" [1] "co2l0 = -152.17 co2l1 = 0.259" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "36 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "4 out of 1032 1-min values rejected as stack air" [1] "4 out of 1032 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"