[1] "2025-04-30 01:23:43 MDT" [1] "1605" "160524" "d145" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160524a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:23:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.92, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 11 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 11 MR FC 2 jog(s) with SP SD > 1000" [1] "361 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.92, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 11 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 11 RC FC 2 jog(s) with SP SD > 1000" [1] "359 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:23:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:23:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:24:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:24:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 359 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1077 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:24:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 396.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.51 minutes" [1] "Average Cal: 7.01 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 5 [4,] 6 7 [5,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 12 19 0.009073698 0.01394213 0.01220320 2 10.549573 124.5811 3 2 20 28 0.016028877 0.02228811 0.01970477 2 -12.255604 233.7679 5 2 213 217 0.217745370 0.22122266 0.22052731 2 -12.290149 246.7677 7 3 220 227 0.232350463 0.23791435 0.23756655 2 -3.102457 233.5641 9 4 399 404 0.427111140 0.43267541 0.43128446 1 10.573552 138.5595 12 2 581 590 0.635142101 0.64140156 0.63896715 2 -12.101289 249.8439 13 4 591 600 0.642097222 0.64835648 0.64592221 2 10.678703 139.8788 16 4 859 868 0.843848438 0.85010764 0.84767356 2 10.711789 147.3461 17 2 869 878 0.850806626 0.85706623 0.85463221 2 -12.064781 247.8945 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.076968 1.262256 -1.927414e-03 -5.71179515 0.004886272 11.10197508 3 1.076958 1.262239 -9.284140e-06 2.14174535 0.008944525 16.86694609 5 1.076067 1.260996 -2.210686e-03 -6.48685081 0.002369336 6.49522966 7 1.076425 1.261164 -2.198049e-03 -4.29943601 0.005647003 3.04522729 9 1.082755 1.267827 -8.237448e-04 -0.03788136 0.001782052 0.07301552 12 1.092565 1.278536 -7.733025e-04 -0.02479378 0.003007605 7.04428699 13 1.092732 1.278729 -1.691097e-03 1.25399492 0.005421389 4.39247797 16 1.098003 1.285224 3.277378e-03 -5.96955055 0.008433097 20.78414087 17 1.097983 1.285203 -1.341855e-03 1.36792249 0.005279784 8.52589219 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.167 co2l1 = 0.943 co2l0 = 0" [1] "co2l0 = -144.75 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "7 out of 30 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "23 out of 953 1-min values rejected as stack air" [1] "23 out of 953 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"