[1] "2025-04-30 01:23:06 MDT" [1] "1605" "160523" "d144" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160523a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:23:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.924, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "55 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.924, ave o2scale2 = 0.788" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "57 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:23:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:23:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:23:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:23:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 57 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1379 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:23:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 399.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.92 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 248 257 0.1742257 0.1804850 0.1780509 2 10.805141 136.7304 3 2 258 267 0.1811805 0.1874398 0.1850055 2 -11.986570 251.3378 5 2 547 556 0.3829347 0.3891941 0.3867597 3 -12.071813 239.1044 6 4 557 566 0.3898894 0.3961483 0.3937144 3 10.712172 133.2168 7 3 567 576 0.3968446 0.4031076 0.4020615 3 -2.906703 237.2145 9 4 836 845 0.5916886 0.5979515 0.5955175 2 10.593055 131.2032 10 2 846 855 0.5986470 0.6049071 0.6024726 2 -12.208688 253.7735 12 2 1124 1133 0.8003657 0.8066287 0.8041914 3 -12.258781 247.2857 13 4 1134 1142 0.8080197 0.8135874 0.8114989 3 10.541321 138.2455 14 5 1143 1152 0.8142827 0.8205428 0.8194992 NA -1.755344 185.9046 15 3 1153 1162 0.8212384 0.8274995 0.8264548 3 -3.060500 235.3596 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.089939 1.276971 2.824874e-05 -0.3356008 0.0016003452 3.011993 3 1.089895 1.276918 -3.330375e-03 0.5587988 0.0095922121 3.053804 5 1.085851 1.272254 -1.424833e-03 -1.4925177 0.0046250000 8.110246 6 1.085734 1.272092 1.070033e-03 -0.2658830 0.0056112680 4.529958 7 1.085378 1.271649 -1.997224e-03 -4.2052987 0.0053309815 5.584764 9 1.078701 1.264194 -1.642708e-03 1.7876054 0.0055296923 6.344545 10 1.078413 1.263896 -2.195996e-03 -1.3774135 0.0068047548 4.825144 12 1.075019 1.260132 -3.858762e-03 0.6735480 0.0096192585 5.989672 13 1.075423 1.260593 1.972798e-03 1.1976101 0.0044893434 4.574496 14 1.075847 1.261023 -8.109457e-04 -15.1700375 0.0005745243 20.631655 15 1.076204 1.261431 1.412831e-03 -2.4054431 0.0046441447 7.897989 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.114 co2l1 = 0.944 co2l0 = -0.024" [1] "co2l0 = -146.33 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 1238 1-min values rejected as stack air" [1] "2 out of 1238 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"