[1] "2025-04-30 01:22:47 MDT" [1] "1605" "160522" "d143" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160522a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 72210 63 [1] 72210 [1] 72210 [1] "testing skipping spike filter" [1] 72210 [1] 72210 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:22:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.911, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "68 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.913, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "60 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:22:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:22:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:22:58 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:22:59 MDT" [1] "reading in recalculated plot titles" [1] "Removed 60 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 601 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:23:01 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.7" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 395.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 263 272 0.7568635 0.7631229 0.7606890 2 10.963758 135.9481 1.094681 4 2 273 282 0.7638220 0.7700816 0.7676475 2 -11.811727 250.3953 1.094717 6 2 553 562 0.9655562 0.9718194 0.9693832 3 -11.935727 252.6606 1.091392 7 4 563 572 0.9725150 0.9787743 0.9763400 3 10.842211 134.6718 1.091532 8 3 573 581 0.9794699 0.9857292 0.9850336 3 -2.757781 236.0307 1.091207 jfcv2 co2slp o2slp co2sd o2sd 3 1.283296 -0.0016143624 1.3280496 0.004846809 6.410504 4 1.283306 -0.0044552777 1.2963525 0.011639533 12.730057 6 1.278882 -0.0001193155 0.4237337 0.002010835 5.210635 7 1.279069 -0.0011776067 -0.3328114 0.003995245 3.853797 8 1.278771 -0.0012489297 2.5464844 0.003520991 2.793548 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 395.879 co2l1 = 0.944 co2l0 = -0.026" [1] "co2l0 = -145.98 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "25 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "25 out of 508 1-min values rejected as stack air" [1] "25 out of 508 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"