[1] "2017-04-08 21:56:12 MDT"
[1] "1605"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1605/160522.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1605/160523.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1605/160524.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1605/160525.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1605/160526.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1605/160527.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1605/160528.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1605/160529.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1605/160530.html"  
[10] "/net/www/docs/homes/stephens/GO2/1605/160531.html"  
[11] "/net/www/docs/homes/stephens/GO2/1605/160601.html"  
[12] "/net/www/docs/homes/stephens/GO2/1605/160602.html"  
[13] "/net/www/docs/homes/stephens/GO2/1605/160603.html"  
[14] "/net/www/docs/homes/stephens/GO2/1605/160604.html"  
[15] "/net/www/docs/homes/stephens/GO2/1605/160605.html"  
[16] "/net/www/docs/homes/stephens/GO2/1605/160606.html"  
[17] "/net/www/docs/homes/stephens/GO2/1605/160607.html"  
[18] "/net/www/docs/homes/stephens/GO2/1605/160608.html"  
[19] "/net/www/docs/homes/stephens/GO2/1605/160609.html"  
[20] "/net/www/docs/homes/stephens/GO2/1605/160610.html"  
[21] "/net/www/docs/homes/stephens/GO2/1605/160611.html"  
[22] "/net/www/docs/homes/stephens/GO2/1605/160612.html"  
[23] "/net/www/docs/homes/stephens/GO2/1605/160613.html"  
[24] "/net/www/docs/homes/stephens/GO2/1605/160614.html"  
[25] "/net/www/docs/homes/stephens/GO2/1605/160615.html"  
[26] "/net/www/docs/homes/stephens/GO2/1605/160616.html"  
[27] "/net/www/docs/homes/stephens/GO2/1605/160617.html"  
[28] "/net/www/docs/homes/stephens/GO2/1605/lmg_1605.html"
 [1] "/net/www/docs/homes/stephens/GO2/1605/160522.html"
 [2] "/net/www/docs/homes/stephens/GO2/1605/160523.html"
 [3] "/net/www/docs/homes/stephens/GO2/1605/160524.html"
 [4] "/net/www/docs/homes/stephens/GO2/1605/160525.html"
 [5] "/net/www/docs/homes/stephens/GO2/1605/160526.html"
 [6] "/net/www/docs/homes/stephens/GO2/1605/160527.html"
 [7] "/net/www/docs/homes/stephens/GO2/1605/160528.html"
 [8] "/net/www/docs/homes/stephens/GO2/1605/160529.html"
 [9] "/net/www/docs/homes/stephens/GO2/1605/160530.html"
[10] "/net/www/docs/homes/stephens/GO2/1605/160531.html"
[11] "/net/www/docs/homes/stephens/GO2/1605/160601.html"
[12] "/net/www/docs/homes/stephens/GO2/1605/160602.html"
[13] "/net/www/docs/homes/stephens/GO2/1605/160603.html"
[14] "/net/www/docs/homes/stephens/GO2/1605/160604.html"
[15] "/net/www/docs/homes/stephens/GO2/1605/160605.html"
[16] "/net/www/docs/homes/stephens/GO2/1605/160606.html"
[17] "/net/www/docs/homes/stephens/GO2/1605/160607.html"
[18] "/net/www/docs/homes/stephens/GO2/1605/160608.html"
[19] "/net/www/docs/homes/stephens/GO2/1605/160609.html"
[20] "/net/www/docs/homes/stephens/GO2/1605/160610.html"
[21] "/net/www/docs/homes/stephens/GO2/1605/160611.html"
[22] "/net/www/docs/homes/stephens/GO2/1605/160612.html"
[23] "/net/www/docs/homes/stephens/GO2/1605/160613.html"
[24] "/net/www/docs/homes/stephens/GO2/1605/160614.html"
[25] "/net/www/docs/homes/stephens/GO2/1605/160615.html"
[26] "/net/www/docs/homes/stephens/GO2/1605/160616.html"
[27] "/net/www/docs/homes/stephens/GO2/1605/160617.html"
[1] "160522" "160617"
 [1] "160522" "160523" "160524" "160525" "160526" "160527" "160528" "160529"
 [9] "160530" "160531" "160601" "160602" "160603" "160604" "160605" "160606"
[17] "160607" "160608" "160609" "160610" "160611" "160612" "160613" "160614"
[25] "160615" "160616" "160617"
[1] "000000" "999999"
[1] "160522_mr_proc.txt, 160522_cal_periods.txt, 160522_cal_param.txt,601jogs"
[1] "160523_mr_proc.txt, 160523_cal_periods.txt, 160523_cal_param.txt,1379jogs"
[1] "160524_mr_proc.txt, 160524_cal_periods.txt, 160524_cal_param.txt,1077jogs"
[1] "160525_mr_proc.txt, 160525_cal_periods.txt, 160525_cal_param.txt,1191jogs"
[1] "160526_mr_proc.txt, 160526_cal_periods.txt, 160526_cal_param.txt,1369jogs"
[1] "160527_mr_proc.txt, 160527_cal_periods.txt, 160527_cal_param.txt,1110jogs"
[1] "160528_mr_proc.txt, 160528_cal_periods.txt, 160528_cal_param.txt,910jogs"
[1] "160529_mr_proc.txt, 160529_cal_periods.txt, 160529_cal_param.txt,1080jogs"
[1] "160530_mr_proc.txt, 160530_cal_periods.txt, 160530_cal_param.txt,606jogs"
[1] "160531_mr_proc.txt, 160531_cal_periods.txt, 160531_cal_param.txt,722jogs"
[1] "160601_mr_proc.txt, 160601_cal_periods.txt, 160601_cal_param.txt,142jogs"
[1] "160602_mr_proc.txt, 160602_cal_periods.txt, 160602_cal_param.txt,1433jogs"
[1] "160603_mr_proc.txt, 160603_cal_periods.txt, 160603_cal_param.txt,1436jogs"
[1] "160604_mr_proc.txt, 160604_cal_periods.txt, 160604_cal_param.txt,1372jogs"
[1] "160605_mr_proc.txt, 160605_cal_periods.txt, 160605_cal_param.txt,1436jogs"
[1] "160606_mr_proc.txt, 160606_cal_periods.txt, 160606_cal_param.txt,1435jogs"
[1] "160607_mr_proc.txt, 160607_cal_periods.txt, 160607_cal_param.txt,1391jogs"
[1] "160608_mr_proc.txt, 160608_cal_periods.txt, 160608_cal_param.txt,921jogs"
[1] "160609_mr_proc.txt, 160609_cal_periods.txt, 160609_cal_param.txt,129jogs"
[1] "160610_mr_proc.txt, 160610_cal_periods.txt, 160610_cal_param.txt,178jogs"
[1] "160611_mr_proc.txt, 160611_cal_periods.txt, 160611_cal_param.txt,383jogs"
[1] "160612_mr_proc.txt, 160612_cal_periods.txt, 160612_cal_param.txt,207jogs"
[1] "160613_mr_proc.txt, 160613_cal_periods.txt, 160613_cal_param.txt,1217jogs"
[1] "160614_mr_proc.txt, 160614_cal_periods.txt, 160614_cal_param.txt,1434jogs"
[1] "160615_mr_proc.txt, 160615_cal_periods.txt, 160615_cal_param.txt,1207jogs"
[1] "160616_mr_proc.txt, 160616_cal_periods.txt, 160616_cal_param.txt,1128jogs"
[1] "160617_mr_proc.txt, 160617_cal_periods.txt, 160617_cal_param.txt,112jogs"
[1] "160522" "160617" "d143"   "d169"  
[1] "Calculating derived concentration values"
[1] "2017-04-08 21:56:59 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.933, ave o2scale2 = 0.791"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-08 21:57:12 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-08 21:57:34 MDT"
[1] "2017-04-08 21:57:39 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.48 O2 = -529.1"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.98 O2 = -657.2"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.93 O2 = -579.4"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1605 Valve transient for  Line 1 after Line 2 = -0.01 , 0.01 , 0.05 , 0.08 , 0.05 n = 5"
[1] "1605 Valve transient for  Line 1 after Cal = -0.82 , -0.37 , 0.02 , 0.03 , 0.03 n = 58"
[1] "1605 Valve transient for  Line 2 after Line 1 = 3.08 , 1.52 , -0.09 , -0.13 , -0.13 n = 6"
[1] "1605 Valve transient for  Line 2 after Cal = -0.56 , -0.2 , 0.04 , 0.03 , 0.01 n = 19"
[1] "1605 Valve transient for  Line 1 after HS = -0.95 , -0.47 , 0.04 , 0.04 , 0.04 n = 26"
[1] "1605 Valve transient for  Line 1 after MS = -0.44 , -0.2 , 0.02 , 0.02 , -0.01 n = 27"
[1] "1605 Valve transient for  Line 1 after LT = -6.26 , -4.48 , -1.33 , 0.06 , 0.08 n = 5"
[1] "1605 Valve transient for  Line 2 after HS = -0.89 , -0.43 , -0.01 , -0.01 , -0.01 n = 11"
[1] "1605 Valve transient for  Line 2 after MS = -0.36 , -0.16 , 0.04 , 0.04 , 0.03 n = 8"
[1] "1605 Valve transient for  HS after Line 1 = 0.92 , 0.47 , 0.01 , 0 , 0 n = 25"
[1] "1605 Valve transient for  HS after Line 2 = 0.82 , 0.42 , 0.01 , 0 , 0 n = 10"
[1] "1605 Valve transient for  HS after MS = 1.35 , 0.68 , 0.01 , 0.01 , 0 n = 1"
[1] "1605 Valve transient for  HS after LS = 3.51 , 1.77 , 0.02 , 0.01 , 0 n = 36"
[1] "1605 Valve transient for  MS after Line 1 = -0.2 , -0.1 , 0 , 0 , 0 n = 1"
[1] "1605 Valve transient for  MS after LS = 2.1 , 1.05 , 0 , 0 , 0 n = 21"
[1] "1605 Valve transient for  MS after LT = 1.32 , 0.66 , 0.01 , 0 , 0 n = 12"
[1] "1605 Valve transient for  LS after Line 1 = -1.5 , -0.76 , 0 , 0 , 0 n = 27"
[1] "1605 Valve transient for  LS after Line 2 = -1.42 , -0.71 , 0 , 0 , 0 n = 8"
[1] "1605 Valve transient for  LS after HS = -3.53 , -1.77 , -0.01 , 0 , 0 n = 44"
[1] "1605 Valve transient for  LT after Line 1 = 0.06 , 0.05 , 0.04 , 0.02 , 0.02 n = 1"
[1] "1605 Valve transient for  LT after LS = 0.73 , 0.38 , 0.03 , 0.02 , 0.02 n = 15"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "501 out of 4805 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "4304 out of 21960 1-min values rejected as stack air"
[1] "2670 out of 15834 Line 1 1-min values rejected as stack air"
[1] "1634 out of 6126 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1605loxy.d143"
[1] "LMG1605loxy.d144"
[1] "LMG1605loxy.d145"
[1] "LMG1605loxy.d146"
[1] "LMG1605loxy.d147"
[1] "LMG1605loxy.d148"
[1] "LMG1605loxy.d149"
[1] "LMG1605loxy.d150"
[1] "LMG1605loxy.d151"
[1] "LMG1605loxy.d158"
[1] "LMG1605loxy.d159"
[1] "LMG1605loxy.d160"
[1] "LMG1605loxy.d161"
[1] "LMG1605loxy.d162"
[1] "LMG1605loxy.d169"
[1] "LMG1605loxy.d170"
[1] "LMG1605loxy.d171"
[1] "LMG1605loxy.d172"
[1] "LMG1605loxy.d173"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.4468275
 [2,]  97.5 0.4468275
 [3,] 102.5 0.7149240
 [4,] 107.5 0.6255585
 [5,] 112.5 0.7149240
 [6,] 117.5 0.9830206
 [7,] 122.5 1.0723861
 [8,] 127.5 0.9830206
 [9,] 132.5 1.4298481
[10,] 137.5 0.9830206
[11,] 142.5 0.8936550
[12,] 147.5 0.4468275
[13,] 152.5 0.7149240
[14,] 157.5 0.6255585
[15,] 162.5 0.7149240
[16,] 167.5 2.1447721
[17,] 172.5 1.4298481
[18,] 177.5 0.5361930
[19,] 182.5 1.0723861
[20,] 187.5 0.5361930
[21,] 192.5 0.7149240
[22,] 197.5 0.9830206
[23,] 202.5 0.6255585
[24,] 207.5 0.8936550
[25,] 212.5 0.8042895
[26,] 217.5 0.7149240
[27,] 222.5 1.5192136
[28,] 227.5 0.9830206
[29,] 232.5 1.1617516
[30,] 237.5 0.8936550
[31,] 242.5 0.9830206
[32,] 247.5 0.5361930
[33,] 252.5 0.8042895
[34,] 257.5 0.8936550
[35,] 262.5 0.7149240
[36,] 267.5 0.8042895
[37,] 272.5 0.7149240
[38,] 277.5 0.6255585
[39,] 282.5 0.8936550
[40,] 287.5 0.6255585
[41,] 292.5 0.6255585
[42,] 297.5 0.8936550
[43,] 302.5 0.7149240
[44,] 307.5 0.6255585
[45,] 312.5 0.8042895
[46,] 317.5 0.5361930
[47,] 322.5 0.1787310
[48,] 327.5 0.1787310
[49,] 332.5 0.3574620
[50,] 337.5 0.2680965
[51,] 347.5 0.2680965
[52,] 352.5 0.0893655
[53,] 357.5 0.0893655
[54,] 362.5 0.0893655
[55,] 367.5 0.0893655
[56,] 372.5 0.0893655
[57,] 377.5 0.1787310
[58,] 397.5 0.2680965
[59,] 402.5 0.5361930
[60,] 407.5 0.4468275
[61,] 412.5 0.4468275
[62,] 417.5 0.6255585
[63,] 422.5 0.4468275
[64,] 427.5 0.3574620
[65,] 432.5 0.3574620
[66,] 437.5 0.2680965
[67,] 442.5 0.4468275
[68,] 447.5 0.3574620
       [,1]      [,2]
 [1,]  92.5 0.0893655
 [2,]  97.5 0.5361930
 [3,] 102.5 0.2680965
 [4,] 107.5 0.5361930
 [5,] 112.5 0.4468275
 [6,] 117.5 0.2680965
 [7,] 122.5 0.3574620
 [8,] 127.5 0.4468275
 [9,] 132.5 0.0893655
[10,] 137.5 0.2680965
[11,] 147.5 0.2680965
[12,] 152.5 0.1787310
[13,] 157.5 0.1787310
[14,] 162.5 0.8042895
[15,] 167.5 1.4298481
[16,] 172.5 1.1617516
[17,] 177.5 0.8936550
[18,] 182.5 0.2680965
[19,] 187.5 0.3574620
[20,] 192.5 0.1787310
[21,] 202.5 0.5361930
[22,] 207.5 0.4468275
[23,] 212.5 0.2680965
[24,] 217.5 1.9660411
[25,] 222.5 1.7873101
[26,] 227.5 1.4298481
[27,] 232.5 1.7873101
[28,] 237.5 1.6085791
[29,] 242.5 1.7873101
[30,] 247.5 1.6085791
[31,] 252.5 0.7149240
[32,] 257.5 0.8042895
[33,] 262.5 1.0723861
[34,] 267.5 1.1617516
[35,] 272.5 0.4468275
[36,] 277.5 0.4468275
[37,] 282.5 0.3574620
[38,] 287.5 0.3574620
[39,] 292.5 0.0893655
[40,] 297.5 0.4468275
[41,] 302.5 1.0723861
[42,] 307.5 0.5361930
[43,] 312.5 0.3574620
[44,] 317.5 0.8936550
[45,] 322.5 1.2511171
[46,] 327.5 0.8936550
[47,] 332.5 0.4468275
[48,] 337.5 0.0893655
[49,] 362.5 0.0893655
[50,] 367.5 0.0893655
[51,] 377.5 0.2680965
[52,] 382.5 0.5361930
[53,] 387.5 0.1787310
[54,] 392.5 0.5361930
[55,] 397.5 0.2680965
[56,] 402.5 0.3574620
[57,] 407.5 0.4468275
[58,] 412.5 0.9830206
[59,] 417.5 0.4468275
[60,] 427.5 0.0893655
[61,] 432.5 0.0893655
[62,] 437.5 0.1787310
[63,] 447.5 0.2680965
       [,1]      [,2]
 [1,]  92.5 0.0893655
 [2,]  97.5 0.0893655
 [3,] 107.5 0.0893655
 [4,] 117.5 0.1787310
 [5,] 122.5 0.0893655
 [6,] 127.5 0.0893655
 [7,] 132.5 0.0893655
 [8,] 142.5 0.0893655
 [9,] 152.5 0.0893655
[10,] 162.5 0.0893655
[11,] 197.5 0.2680965
[12,] 202.5 0.0893655
[13,] 207.5 0.1787310
[14,] 212.5 0.1787310
[15,] 217.5 0.0893655
[16,] 222.5 0.8042895
[17,] 227.5 0.2680965
[18,] 232.5 0.2680965
[19,] 237.5 0.0893655
[20,] 242.5 0.3574620
[21,] 247.5 0.1787310
[22,] 252.5 0.0893655
[23,] 257.5 0.1787310
[24,] 272.5 0.8042895
[25,] 277.5 0.8936550
[26,] 282.5 0.2680965
[27,] 302.5 0.3574620
[28,] 312.5 0.0893655
[29,] 317.5 0.1787310
[30,] 322.5 0.0893655
[31,] 342.5 0.1787310
[32,] 377.5 0.1787310
[33,] 382.5 0.0893655
[34,] 412.5 0.3574620
[35,] 417.5 0.0893655
[36,] 422.5 2.6809651
[37,] 427.5 0.8936550
[38,] 432.5 0.0893655
[39,] 442.5 0.0893655
[40,] 447.5 0.0893655
       [,1]      [,2]
 [1,] 107.5 0.0893655
 [2,] 127.5 0.4468275
 [3,] 132.5 0.3574620
 [4,] 137.5 0.0893655
 [5,] 152.5 0.0893655
 [6,] 182.5 0.0000000
 [7,] 187.5 0.0893655
 [8,] 212.5 0.0893655
 [9,] 222.5 0.0893655
[10,] 247.5 0.0893655
[11,] 252.5 0.0893655
[12,] 277.5 0.0893655
[13,] 292.5 0.0893655
[14,] 307.5 0.0893655
[15,] 327.5 0.0893655
[16,] 342.5 0.0893655
[17,] 352.5 0.0893655
[18,] 357.5 0.0000000
[19,] 397.5 0.2680965
[20,] 402.5 0.1787310
[21,] 407.5 0.1787310
[22,] 412.5 0.4468275
[23,] 417.5 0.4468275
[24,] 422.5 0.5361930
[25,] 427.5 0.7149240
[26,] 437.5 0.0893655
[27,] 442.5 0.0893655
[1] "making cruise html"
[1] "2017-04-08 21:58:13 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"