[1] "2017-04-07 23:29:02 MDT"
[1] "1602"   "160224" "d055"  
[1] "reading in high rate data from /scr/raf/stephens/GO2DAT/DIRECT/160224a.hr"
[1] "reading in hr file header"
Read 27 items
[1] "Parsing HR flags"
[1] "Doing high rate calculations (mean, sd, slope, shape)"
[1] "recalculating jog averages"
[1] "recalculating jog sds"
[1] "recalculating jog slopes"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2017-04-07 23:29:09 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.9, ave o2scale2 = 0.794"
[1] "191 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.9, ave o2scale2 = 0.794"
[1] "193 RC delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2017-04-07 23:29:11 MDT"
[1] "Plotting 1-second data"
[1] "2017-04-07 23:29:11 MDT"
[1] "reading in high-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-07 23:29:21 MDT"
[1] "reading in medium-rate plot titles"
[1] "Plotting recalculated 1-minute data"
[1] "2017-04-07 23:29:22 MDT"
[1] "reading in recalculated plot titles"
[1] "Removed 193 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "Removed 214 row(s) with low FLSP"
[1] "TEMP: 1029 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-07 23:29:26 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.48 O2 = -529.1"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.98 O2 = -657.2"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.93 O2 = -579.4"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Nominal linear calibrations:"
[1] "co2scl = 0.946  co2off = 394.33 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "Median Cal: 9.01 minutes"
[1] "Average Cal: 7.83 minutes"
[1] "Shortest Cal: 1.01 minutes"
[1] "Longest Cal: 9.02 minutes"
[1] "Removed 2 calibration row(s) with high SD"
[1] "Plotting calibration sds and slopes"
[1] "cbind(calstart,calend)"
     calstart calend
[1,]        1      2
[2,]        3      4
[3,]        5      8
[4,]        9      9
[1] "calperiods$grp"
[1]  2  2  2  2  3  3 NA  3  1
[1] "Plotting calibration fits"
[1] "Average calibration parameters:"
[1] "co2l0 = 399.903  co2l1 = 0.945 co2l0 = -0.023"
[1] "co2l0 = -58.11  co2l1 = 0.224"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "15 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "5 out of 907 1-min values rejected as stack air"
[1] "5 out of 907 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "making html"