[1] "2025-04-30 01:21:42 MDT" [1] "1602" "160224" "d055" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160224a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:21:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.9, ave o2scale2 = 0.794" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "191 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.9, ave o2scale2 = 0.794" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "193 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:21:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:21:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:22:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:22:05 MDT" [1] "reading in recalculated plot titles" [1] "Removed 193 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 214 row(s) with low FLSP" [1] "TEMP: 1029 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:22:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 394.53 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.83 minutes" [1] "Shortest Cal: 1.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 8 [4,] 9 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 168 176 0.1943213 0.2005845 0.1981987 2 6.416759 -266.2509 4 3 177 184 0.2012799 0.2068473 0.2064996 2 -7.169786 -165.0873 6 4 416 424 0.3960486 0.4023077 0.4000225 2 6.445607 -264.5098 7 2 425 433 0.4030035 0.4092667 0.4067802 2 -16.318812 -148.9512 9 2 700 708 0.6047743 0.6110382 0.6086510 3 -16.338687 -146.3591 10 4 709 716 0.6117338 0.6166058 0.6148673 3 6.435010 -265.5070 11 5 717 726 0.6187076 0.6249708 0.6239258 NA -6.496031 -193.8239 12 3 727 736 0.6256666 0.6319287 0.6308856 3 -7.141578 -166.3782 14 4 993 999 0.8135672 0.8184387 0.8166306 1 6.418475 -269.1974 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.113018 1.261323 0.0008473411 -1.5275347 0.0048851628 7.6892578 4 1.113176 1.261556 0.0029469328 -9.8720368 0.0075425982 6.9898916 6 1.113509 1.262439 0.0002396705 0.9008817 0.0016894141 3.3279352 7 1.113516 1.262436 -0.0019734593 -0.5572368 0.0070818549 4.6603246 9 1.111457 1.260601 -0.0021761014 -0.1845351 0.0059442670 7.4848963 10 1.111247 1.260414 0.0006296817 -0.0518728 0.0061898880 0.6394229 11 1.111047 1.260201 -0.0009361738 5.3235876 0.0006629126 8.7939337 12 1.111262 1.260435 0.0037815154 2.2952765 0.0106386336 4.0280884 14 1.109022 1.258015 -0.0002837825 -0.9816479 0.0023018547 3.5361848 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.099 co2l1 = 0.945 co2l0 = -0.031" [1] "co2l0 = -57.62 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "5 out of 907 1-min values rejected as stack air" [1] "5 out of 907 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"