[1] "2025-04-30 01:17:34 MDT" [1] "1601" "160216" "d047" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160216a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 75953 63 [1] 75953 [1] 75953 [1] "testing skipping spike filter" [1] 75953 [1] 75953 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:17:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.911, ave o2scale2 = 0.801" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "276 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.911, ave o2scale2 = 0.801" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "277 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:17:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:17:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:17:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:17:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 278 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 911 row(s) with low FLSP" [1] "TEMP: 76 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:17:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 412.5 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.01 minutes" [1] "Average Cal: 35.37 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 298.6 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 5 [4,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 8 0.1686995 0.1742639 0.1722931 2 -18.454703 -152.5389 2 4 9 15 0.1756547 0.1805266 0.1791326 2 4.339884 -273.5311 5 4 24 32 0.3774089 0.3829765 0.3808870 2 4.485991 -266.9622 6 2 33 48 0.3836719 0.5910317 0.5024117 2 -18.244463 -155.5600 7 4 49 53 0.5952083 0.5986854 0.5979899 1 4.555901 -269.0419 9 4 61 67 0.7949933 0.7991701 0.7977771 2 4.624512 -269.7794 10 2 68 76 0.8012569 0.8068242 0.8047366 2 -18.133732 -149.9053 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.090810 1.240449 0.0017899509 0.397256358 0.005115025 2.366332 2 1.091073 1.240769 0.0001531161 -1.077931430 0.001003631 3.409275 5 1.099966 1.250231 0.0012683520 1.616499811 0.005915247 4.827138 6 1.103033 1.253901 0.0002776789 -0.001211992 0.042225402 2.104761 7 1.104424 1.255516 -0.0036589154 3.742947285 0.003827083 3.748172 9 1.107302 1.258995 0.0026850987 1.063908077 0.004657278 1.708632 10 1.107465 1.259269 -0.0025362278 -1.376121848 0.005902276 5.402838 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.927 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -57.96 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "NO SAMPLE PERIODS" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"