[1] "2025-04-30 01:17:05 MDT" [1] "1601" "160215" "d046" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160215a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:17:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.909, ave o2scale2 = 0.799" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.909, ave o2scale2 = 0.799" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "32 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:17:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:17:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:17:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:17:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 32 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1131 row(s) with low FLSP" [1] "TEMP: 273 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:17:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 397.91 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 66.53 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 299.64 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 164 172 0.1248856 0.1304536 0.1283655 2 4.640893 -271.2089 3 2 173 190 0.1311488 0.3391887 0.2481289 2 -18.164309 -155.0295 4 4 191 200 0.3398849 0.3461476 0.3437102 2 4.584125 -270.1344 5 3 201 209 0.3468429 0.3524065 0.3517111 2 -9.019830 -167.1738 6 4 210 218 0.5424253 0.5479931 0.5459064 2 4.547848 -269.3888 7 2 219 236 0.5486887 0.7567715 0.6656870 2 -18.254254 -155.9765 8 4 237 246 0.7574668 0.7637269 0.7612923 2 4.510242 -269.3803 9 3 247 255 0.7644224 0.7699896 0.7692943 2 -9.110366 -163.8829 10 4 256 264 0.9599213 0.9654850 0.9633986 2 4.336500 -271.6514 11 2 265 273 0.9661806 0.9717452 0.9696586 2 -18.456116 -155.3038 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.105903 1.257381 3.473207e-03 -0.6392321628 0.007696786 2.6925947 3 1.104621 1.256122 -1.909264e-04 -0.0042132849 0.029437261 2.6145536 4 1.103339 1.254782 1.018949e-03 0.3869141697 0.004727154 3.0769580 5 1.103245 1.254759 -2.122002e-03 -0.8390619940 0.004746396 0.8403273 6 1.102794 1.254072 2.634140e-03 -0.1577961034 0.006114453 9.6162704 7 1.100660 1.251763 -1.609706e-04 -0.0001705032 0.024975628 2.9235822 8 1.098738 1.249583 1.215994e-03 0.2606946135 0.008216411 3.0273123 9 1.098431 1.249304 -9.086219e-05 7.4238438462 0.003377975 7.4343479 10 1.088356 1.238282 -7.586102e-05 -1.6348611401 0.003518552 3.6792655 11 1.088147 1.238100 6.419104e-04 -0.9990560944 0.004509023 2.2258519 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.913 co2l1 = 0.945 co2l0 = 0" [1] "co2l0 = -56.86 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 161 1-min values rejected as stack air" [1] "0 out of 161 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"