[1] "2025-04-30 01:16:26 MDT" [1] "1601" "160214" "d045" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160214a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:16:30 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.904, ave o2scale2 = 0.795" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "26 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.904, ave o2scale2 = 0.795" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "28 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:16:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:16:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:16:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:16:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 28 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1408 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:17:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 397.55 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 108 117 0.08038542 0.08664722 0.08421294 3 -18.091148 -159.0655 3 4 118 127 0.08735104 0.09361395 0.09117709 3 4.690937 -266.4475 4 3 128 137 0.09430929 0.10057266 0.09952944 3 -8.911805 -164.7592 6 4 402 411 0.28911458 0.29537731 0.29294214 2 4.683539 -268.7823 7 2 412 418 0.29607289 0.30233218 0.30094116 2 -18.099130 -160.0337 9 2 697 704 0.49787966 0.50275226 0.50101022 3 -18.101812 -156.3723 10 4 705 714 0.50483863 0.51110185 0.50866505 3 4.670563 -266.8551 11 3 715 724 0.51179748 0.51806027 0.51701436 3 -8.928359 -166.3280 13 4 993 1002 0.70665631 0.71291655 0.71048221 2 4.638789 -278.2472 14 2 1003 1012 0.71361192 0.71987500 0.71744072 2 -18.154563 -156.6249 16 2 1292 1301 0.91542248 0.92168174 0.91924769 3 -18.153516 -157.6057 17 4 1302 1311 0.92237740 0.92864036 0.92620636 3 4.630094 -272.2208 18 5 1312 1321 0.92933576 0.93559595 0.93455263 NA -8.357469 -198.5615 19 3 1322 1331 0.93629129 0.94255440 0.94151103 3 -8.975117 -168.6098 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.109137 1.261170 -1.328891e-03 -1.0240790 0.003935577 5.668882 3 1.109045 1.261058 1.913659e-03 1.1539821 0.007103586 8.486999 4 1.109148 1.261152 1.635428e-03 -1.1507413 0.004851182 2.878011 6 1.107722 1.259501 -9.984709e-04 0.6351528 0.003750140 4.119603 7 1.107177 1.258856 -1.967424e-03 -4.1047240 0.005511363 7.186624 9 1.106446 1.257834 -3.359376e-03 0.1614402 0.006585733 1.832286 10 1.106278 1.257636 -1.375120e-03 -1.4794622 0.004882435 4.386899 11 1.106155 1.257567 5.899205e-05 5.5728109 0.002848823 7.255393 13 1.103979 1.254817 -2.468559e-03 -4.4407756 0.006378932 18.527551 14 1.103863 1.254808 -3.919887e-03 0.8644936 0.009994753 3.082614 16 1.104756 1.255945 1.518725e-03 1.0920766 0.005228885 4.784854 17 1.104790 1.255984 2.702878e-03 -0.3381950 0.007741643 1.027376 18 1.104830 1.256035 -2.808288e-03 -1.4787616 0.001988738 2.024166 19 1.104961 1.256177 1.220806e-03 0.3678527 0.003551508 1.457355 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.774 co2l1 = 0.944 co2l0 = -0.014" [1] "co2l0 = -55.62 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1231 1-min values rejected as stack air" [1] "0 out of 1231 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"