[1] "2025-04-30 01:16:09 MDT" [1] "1601" "160213" "d044" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160213a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 58816 63 [1] 58816 [1] 58816 [1] "testing skipping spike filter" [1] 58816 [1] 58816 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:16:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.902, ave o2scale2 = 0.794" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.902, ave o2scale2 = 0.794" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "20 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:16:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:16:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:16:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:16:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 20 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 959 0 TRUE" [1] "Removed 483 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:16:21 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 401.82 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 8 17 0.6697917 0.6760548 0.6736196 2 -18.106594 -160.0154 3 4 18 27 0.6767502 0.6830133 0.6805787 2 4.668844 -266.2983 4 5 28 37 0.6837086 0.6899685 0.6889253 NA -8.969719 -196.1187 6 4 297 306 0.8715856 0.8778484 0.8754109 2 4.701805 -269.0975 7 2 307 316 0.8785439 0.8848039 0.8823689 2 -18.064234 -151.7792 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.108391 1.260207 -0.0007428283 1.141432 0.005310767 9.006998 3 1.108619 1.260546 0.0006128710 -1.412869 0.004522390 6.114894 4 1.108736 1.260735 0.0074269784 5.405415 0.005259107 8.002931 6 1.110390 1.262597 0.0002122858 1.650786 0.003552608 5.668505 7 1.110464 1.262718 -0.0021571200 -1.475082 0.005761513 8.245698 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.756 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -55.52 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 394 1-min values rejected as stack air" [1] "0 out of 394 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"