[1] "2025-04-30 01:14:09 MDT" [1] "1601" "160206" "d037" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160206a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 63992 63 [1] 63992 [1] 63992 [1] "testing skipping spike filter" [1] 63992 [1] 63992 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:14:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.783" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.783" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:14:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:14:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:14:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:14:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 454 row(s) with high TFRIDGE" [1] "TEMP: 608 0 TRUE" [1] "Removed 232 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:14:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 394.24 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.21 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 63 72 0.04386727 0.05013079 0.04769531 2 1.294852 379.7020 3 2 73 82 0.05082645 0.05708608 0.05465194 2 -21.387734 494.6913 6 4 178 187 0.25952630 0.26578571 0.26335137 2 1.330727 380.3563 7 3 188 197 0.26648096 0.27274436 0.27170138 2 -12.222711 485.2813 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.123499 1.275875 -0.0003882420 0.88719665 0.003479843 2.4963372 3 1.123640 1.276044 -0.0005541635 0.38027898 0.004109108 2.4080199 6 1.124774 1.277597 0.0002102703 -0.04752135 0.004112662 1.2922159 7 1.124910 1.277755 -0.0008061410 0.20408446 0.002415523 0.6679565 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.935 co2l1 = 0.949 co2l0 = 0" [1] "co2l0 = -199.74 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "19 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "41 out of 318 1-min values rejected as stack air" [1] "41 out of 318 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"