[1] "2025-04-30 01:12:33 MDT" [1] "1601" "160203" "d034" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160203a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:12:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.884, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.884, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:12:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:12:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:12:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:12:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1429 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:13:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 408.64 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.71 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 173 182 0.1221323 0.1283924 0.1259580 2 1.478195 381.4148 3 2 183 192 0.1290880 0.1353473 0.1329130 2 -21.218461 497.0035 5 2 473 482 0.3308206 0.3370837 0.3346479 3 -21.256977 494.4694 6 4 483 492 0.3377790 0.3440384 0.3416043 3 1.434227 378.0718 7 5 493 502 0.3447338 0.3509968 0.3499538 NA -11.483969 452.1195 8 3 503 512 0.3516922 0.3579516 0.3569084 3 -12.100383 477.1431 10 4 772 778 0.5395729 0.5437465 0.5423554 2 1.425737 374.4891 11 2 779 787 0.5472240 0.5527882 0.5507017 2 -21.255670 497.1553 13 2 1068 1077 0.7482370 0.7544968 0.7520627 3 -21.301500 500.3098 14 4 1078 1087 0.7551922 0.7614519 0.7590178 3 1.376336 381.1117 15 3 1088 1097 0.7621473 0.7684072 0.7673640 3 -12.163680 481.2868 17 4 1368 1377 0.9569398 0.9631992 0.9607650 2 1.383266 381.9613 18 2 1378 1387 0.9638947 0.9701539 0.9677197 2 -21.309859 493.6864 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.135754 1.289221 3.471521e-04 1.6527977 0.006127317 4.1835078 3 1.135848 1.289319 -6.656673e-06 0.4019301 0.001376597 3.1646252 5 1.132112 1.285217 -1.085878e-03 0.7948529 0.003833292 3.1545971 6 1.132015 1.285099 2.529772e-03 0.8646080 0.008573666 3.5263440 7 1.132167 1.285252 -5.555324e-03 1.5459517 0.003933281 2.1816777 8 1.132221 1.285300 -6.991620e-04 -0.6823145 0.004357034 1.5530781 10 1.129044 1.281750 2.134324e-03 1.8298160 0.005158125 4.1283786 11 1.129424 1.282317 1.700438e-03 2.9685760 0.003779522 6.8607586 13 1.128378 1.281066 -1.329870e-03 1.4496153 0.003564301 4.4561622 14 1.128239 1.280914 3.069017e-03 0.8965150 0.009027051 3.3284102 15 1.128294 1.280994 3.572293e-03 -0.3499127 0.009227678 0.5348988 17 1.128053 1.280705 -1.178378e-03 0.9911152 0.004017227 3.3232274 18 1.128135 1.280812 -1.092175e-03 3.9507570 0.003019422 9.8487276 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.832 co2l1 = 0.948 co2l0 = 0.001" [1] "co2l0 = -199.22 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "142 out of 260 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "118 out of 1266 1-min values rejected as stack air" [1] "118 out of 1266 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"