[1] "2025-04-30 01:12:01 MDT" [1] "1601" "160202" "d033" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160202a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:12:05 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.773" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.773" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:12:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:12:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:12:24 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:12:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 30 row(s) with low FLSP" [1] "TEMP: 1384 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:12:28 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 408.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 112 121 0.07866508 0.08492422 0.08249005 3 -21.067570 495.9142 3 4 122 131 0.08561956 0.09187946 0.08944526 3 1.602945 373.3661 4 5 132 141 0.09257486 0.09883440 0.09779107 NA -11.295594 444.8882 5 3 142 151 0.09952972 0.10578935 0.10474602 3 -11.945891 482.8148 7 4 395 404 0.28734144 0.29360420 0.29116824 2 1.569477 384.8002 8 2 405 414 0.29429977 0.30055909 0.29812499 2 -21.123070 496.5200 10 2 695 704 0.49606840 0.50232763 0.49989379 3 -21.139359 499.1852 11 4 705 714 0.50302315 0.50928617 0.50685107 3 1.530852 380.4652 12 3 715 724 0.50998157 0.51624190 0.51519850 3 -12.014508 480.7220 14 4 961 969 0.70547106 0.71103562 0.70894883 2 1.508679 379.2182 15 2 970 979 0.71173099 0.71799025 0.71555609 2 -21.170125 493.9281 17 2 1260 1269 0.91345790 0.91971765 0.91728368 3 -21.200516 495.2530 18 4 1270 1279 0.92041319 0.92667642 0.92424186 3 1.474031 379.1123 19 3 1280 1289 0.92737173 0.93363186 0.93258846 3 -12.071070 482.3055 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.142449 1.295937 -1.508106e-04 2.0823696 0.0008131436 5.156832 3 1.142331 1.295838 2.027498e-03 -0.7012591 0.0066763874 3.262456 4 1.142496 1.296056 -2.808171e-03 3.8579952 0.0019887378 5.848126 5 1.142548 1.296102 -2.332259e-04 -0.7432970 0.0012680615 1.624656 7 1.142072 1.295855 -2.349608e-03 3.6854402 0.0067818312 9.465412 8 1.141944 1.295747 -5.014466e-04 -0.9948490 0.0041553856 8.160233 10 1.139547 1.293223 -8.143125e-04 0.2607113 0.0024878612 1.658436 11 1.139367 1.293006 1.889892e-03 1.5524071 0.0062720982 3.932806 12 1.139392 1.293022 1.556572e-05 2.1184241 0.0036868852 2.992874 14 1.138990 1.292574 -3.365485e-04 3.9081068 0.0014245013 9.919681 15 1.139053 1.292582 -2.589826e-03 0.6022025 0.0070854164 2.615844 17 1.137479 1.291031 -1.422106e-03 0.1735373 0.0038890514 3.542888 18 1.137312 1.290853 1.389383e-03 0.6152931 0.0045569315 1.894930 19 1.137193 1.290722 -4.479266e-04 -0.9941584 0.0026548972 1.365422 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.72 co2l1 = 0.948 co2l0 = 0" [1] "co2l0 = -199.34 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "163 out of 410 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "247 out of 1203 1-min values rejected as stack air" [1] "247 out of 1203 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"