[1] "2025-04-30 01:11:28 MDT" [1] "1601" "160201" "d032" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160201a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:11:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.78" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.78" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:11:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:11:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:11:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:11:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 185 row(s) with high TFRIDGE" [1] "TEMP: 1229 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:11:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 408.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 160 169 0.2432791 0.2495385 0.2471045 3 -21.354664 497.6384 3 4 170 178 0.2502339 0.2564931 0.2542081 3 1.357754 378.5789 4 3 179 188 0.2571887 0.2634483 0.2624049 3 -12.194961 485.1752 6 4 459 468 0.4519612 0.4582202 0.4557862 2 1.435648 381.3659 7 2 469 478 0.4589161 0.4651751 0.4627411 2 -21.248117 495.2699 9 2 752 761 0.6607702 0.6670407 0.6646005 3 -21.214297 497.1463 10 4 762 771 0.6677373 0.6740043 0.6715669 3 1.474781 381.2702 11 3 772 781 0.6747049 0.6809734 0.6799295 3 -12.077141 481.7068 13 4 1043 1052 0.8697223 0.8759915 0.8735518 2 1.548125 380.4528 14 2 1053 1062 0.8766897 0.8829560 0.8805188 2 -21.139719 497.1220 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.126539 1.277338 -0.0020452628 0.57574353 0.005533274 2.9296599 3 1.126821 1.277725 0.0020723129 0.14576614 0.007567796 1.9585646 4 1.127111 1.277988 0.0015667158 0.78266844 0.004733399 1.1502872 6 1.129772 1.281097 0.0014835105 0.06017691 0.005979871 4.1691052 7 1.129912 1.281281 0.0012549358 1.89207243 0.005267238 5.0064779 9 1.132542 1.284442 -0.0007520325 1.05087352 0.002276567 2.9393461 10 1.132612 1.284513 0.0025050899 1.82154167 0.007838137 5.1436106 11 1.132830 1.284717 0.0002914404 -0.39755171 0.003451797 0.8750192 13 1.137469 1.289993 0.0016092601 2.34265356 0.005130333 6.5864518 14 1.137796 1.290407 -0.0001038177 1.51838200 0.003888944 4.2322354 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.799 co2l1 = 0.948 co2l0 = 0.001" [1] "co2l0 = -199.57 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "54 out of 330 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "276 out of 1098 1-min values rejected as stack air" [1] "276 out of 1098 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"