[1] "2025-04-30 01:10:33 MDT" [1] "1601" "160130" "d030" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160130a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85676 63 [1] 85676 [1] 85676 [1] "testing skipping spike filter" [1] 85676 [1] 85676 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:10:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.907, ave o2scale2 = 0.8" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "115 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.907, ave o2scale2 = 0.8" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "115 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:10:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:10:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:10:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:10:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 115 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1309 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:10:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 413.95 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.08 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 10 [5,] 12 13 [6,] 14 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 34 43 0.02383290 0.03009890 0.02766164 2 1.144602 381.0968 3 2 44 53 0.03079514 0.03705599 0.03462193 2 -21.573563 497.4053 5 2 321 330 0.23251710 0.23877662 0.23634251 3 -21.638367 496.3149 6 4 331 340 0.23947222 0.24573151 0.24329723 3 1.069266 384.2533 7 5 341 350 0.24642703 0.25268634 0.25164297 NA -11.864375 456.5291 8 3 351 360 0.25338192 0.25964129 0.25859782 3 -12.488734 475.5493 10 4 598 607 0.44119314 0.44745203 0.44501795 2 1.089195 384.8778 11 2 608 617 0.44814812 0.45440694 0.45197284 2 -21.634820 493.5493 14 2 770 779 0.58120995 0.58747425 0.58503938 2 -21.698578 497.5148 15 4 780 789 0.58816970 0.59442940 0.59199518 2 1.002242 384.0692 16 5 790 799 0.59512500 0.60138466 0.60034164 NA -12.672000 454.1068 18 4 1057 1066 0.78294123 0.78920466 0.78676984 2 1.021094 378.3209 19 2 1067 1076 0.78990012 0.79615972 0.79372528 2 -21.703656 495.3195 21 2 1298 1307 0.99161207 0.99787156 0.99543748 1 -21.641008 516.0792 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.106033 1.252639 1.305148e-03 0.6753826 0.0039611587 4.090700 3 1.106056 1.252664 -2.286715e-03 2.4619425 0.0061748156 7.688831 5 1.104513 1.250859 6.913720e-05 -0.2457540 0.0013534997 3.955588 6 1.104168 1.250473 1.836519e-03 1.2025159 0.0051160364 4.338844 7 1.104083 1.250339 -2.794708e-15 -4.1457423 0.0000000000 5.407696 8 1.103925 1.250155 7.132602e-04 0.6899256 0.0046870536 1.781914 10 1.102865 1.248887 6.169389e-05 0.9971029 0.0020826766 5.350397 11 1.102699 1.248713 -1.403356e-03 0.4579402 0.0046082512 2.983202 14 1.098820 1.244351 -1.673757e-03 -0.4919916 0.0044111706 16.853125 15 1.098879 1.244473 -7.047771e-04 0.2280221 0.0050488062 2.879593 16 1.098913 1.244534 7.490637e-04 -0.3081405 0.0005303301 1.890229 18 1.101507 1.247917 5.937232e-04 1.7436311 0.0024369276 5.153719 19 1.101763 1.248301 -4.769507e-04 -0.2760003 0.0022635998 6.660836 21 1.105778 1.256340 6.574033e-04 5.0834532 0.0019081701 24.421265 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 405.169 co2l1 = 0.947 co2l0 = 0.003" [1] "co2l0 = -202.42 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "32 out of 80 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "48 out of 1117 1-min values rejected as stack air" [1] "48 out of 1117 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"