[1] "2025-04-30 01:07:33 MDT" [1] "1601" "160124" "d024" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160124a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:07:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:07:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:07:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:07:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:07:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 601 row(s) with high TFRIDGE" [1] "TEMP: 833 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:07:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 408.78 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.13 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 250 259 0.2553729 0.2616324 0.2591983 3 -21.102672 494.4824 4 4 260 269 0.2623277 0.2685876 0.2661532 3 1.613031 381.4674 5 5 270 279 0.2692829 0.2755419 0.2744989 NA -11.341063 452.5089 6 3 280 289 0.2762378 0.2824967 0.2814537 3 -11.932563 487.3039 8 4 536 545 0.4640535 0.4703126 0.4678787 2 1.579266 378.1848 9 2 546 555 0.4710085 0.4773017 0.4748554 2 -21.144828 494.3400 11 4 756 765 0.8814480 0.8877117 0.8852739 2 1.544727 380.3411 12 2 766 775 0.8884072 0.8946701 0.8922326 2 -21.157227 494.1052 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.123551 1.269528 2.837426e-04 0.2419615 0.003323474 1.6236479 4 1.123565 1.269492 2.861443e-03 2.2304327 0.007887533 6.4064719 5 1.123674 1.269578 -6.365982e-03 -1.7391873 0.004507806 2.2533395 6 1.123639 1.269571 2.447406e-03 0.3557086 0.006282061 0.9453081 8 1.122461 1.268070 5.321146e-04 2.6336507 0.004886405 6.7965132 9 1.122468 1.268112 -6.902098e-05 1.1893410 0.004331255 3.5462891 11 1.122533 1.267759 -1.220386e-03 1.3093802 0.003607398 3.4869003 12 1.122648 1.267866 -4.614085e-04 1.6630968 0.003079479 4.4218474 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.682 co2l1 = 0.947 co2l0 = 0" [1] "co2l0 = -200.16 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 726 1-min values rejected as stack air" [1] "0 out of 726 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"