[1] "2025-04-30 01:07:03 MDT" [1] "1601" "160123" "d023" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160123a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:07:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.888, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.888, ave o2scale2 = 0.786" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "4 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:07:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:07:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:07:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:07:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1121 row(s) with high TFRIDGE" [1] "TEMP: 311 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:07:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 407.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.19 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 10 0.003101881 0.009361082 0.006926808 2 -21.064023 495.9506 2 4 11 20 0.010056539 0.016315943 0.013881720 2 1.640680 380.0091 5 2 252 261 0.420458391 0.426721209 0.424284965 3 -21.027789 495.6217 6 4 262 271 0.427416696 0.433675984 0.431241837 3 1.677937 383.4982 7 3 272 279 0.434371586 0.439270023 0.438922150 3 -11.900438 482.0996 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.123999 1.270663 -0.0006426066 -0.40065875 0.002948580 2.357226 2 1.123869 1.270530 0.0005266921 -0.73238950 0.003523587 2.705437 5 1.126603 1.274033 0.0002978077 1.29959676 0.001183941 3.367839 6 1.126438 1.273862 -0.0003596166 -0.05415438 0.007037844 2.244981 7 1.126374 1.273803 0.0002372489 2.90571925 0.002705319 2.058506 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.608 co2l1 = 0.947 co2l0 = 0" [1] "co2l0 = -201.65 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 80 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "45 out of 232 1-min values rejected as stack air" [1] "45 out of 232 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"