[1] "2025-04-30 01:06:31 MDT" [1] "1601" "160122" "d022" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160122a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:06:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.791" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.791" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "6 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:06:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:06:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:06:54 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:06:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 6 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 611 row(s) with high TFRIDGE" [1] "TEMP: 819 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:06:58 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 415.43 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.68 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 241 250 0.1682962 0.1745550 0.1721210 3 -21.137602 501.2486 1.117289 3 4 251 260 0.1752504 0.1815102 0.1790760 3 1.564742 380.0811 1.117254 4 3 261 270 0.1822056 0.1884652 0.1874219 3 -12.003031 475.2690 1.117162 6 2 600 609 0.5857190 0.5919781 0.5895441 2 -21.126516 495.2144 1.119222 7 4 610 614 0.5926740 0.5954560 0.5947604 2 1.593438 376.7558 1.119274 jfcv2 co2slp o2slp co2sd o2sd 2 1.263404 -0.001403332 -0.3178015 0.004342088 5.727624 3 1.263362 0.001878899 -1.1258438 0.005279407 2.797668 4 1.263258 0.000854276 -0.6242448 0.003561325 1.110341 6 1.265206 -0.001861986 -0.1931362 0.005079804 1.790633 7 1.265132 0.009047797 3.5745727 0.009489509 3.864926 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.683 co2l1 = 0.947 co2l0 = 0" [1] "co2l0 = -197.86 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "57 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "173 out of 745 1-min values rejected as stack air" [1] "173 out of 745 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"