[1] "2025-04-30 01:05:31 MDT" [1] "1601" "160120" "d020" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160120a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:05:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.895, ave o2scale2 = 0.791" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "116 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.895, ave o2scale2 = 0.791" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "118 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:05:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:05:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:05:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:05:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 118 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 583 row(s) with high TFRIDGE" [1] "TEMP: 735 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:05:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.951 co2off = 411.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.02 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 114 123 0.08112627 0.08739815 0.08495998 3 -20.929000 495.4446 3 4 124 133 0.08809375 0.09435995 0.09192529 3 1.771172 379.8360 4 3 134 143 0.09505547 0.10131481 0.10027150 3 -11.783141 486.4888 6 4 439 448 0.70734803 0.71361308 0.71117723 2 1.613086 378.2098 7 2 449 454 0.71430804 0.71848148 0.71743809 2 -21.123276 511.6592 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.126095 1.271855 -0.0002662583 0.4169277 0.001642081 1.673111 3 1.125755 1.271501 0.0004524644 0.5353100 0.004430358 4.013416 4 1.125658 1.271396 0.0036626503 0.1150927 0.010340344 1.456689 6 1.113666 1.258133 -0.0011344498 -0.6467084 0.003415749 3.554675 7 1.113081 1.257553 -0.0057717329 -10.5347286 0.007828629 13.761953 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.575 co2l1 = 0.947 co2l0 = -0.001" [1] "co2l0 = -193.54 co2l1 = 0.204" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "145 out of 653 1-min values rejected as stack air" [1] "145 out of 653 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"