[1] "2025-04-30 01:04:08 MDT" [1] "1601" "160117" "d017" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160117a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:04:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.789" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "24 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.789" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "24 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:04:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:04:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:04:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:04:27 MDT" [1] "reading in recalculated plot titles" [1] "Removed 24 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1409 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:04:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.5" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 413.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.93 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 217 226 0.1596019 0.1658646 0.1634287 3 -20.706461 497.5579 3 4 227 236 0.1665602 0.1728200 0.1703852 3 2.015984 381.9214 4 3 237 246 0.1735189 0.1797778 0.1787348 3 -11.554836 481.1410 6 4 508 517 0.3683177 0.3745783 0.3721439 2 1.983922 380.1052 7 2 518 527 0.3752743 0.3815464 0.3791081 2 -20.732047 492.8388 9 2 804 813 0.5767990 0.5830607 0.5806254 3 -20.785625 496.8333 10 4 814 823 0.5837564 0.5900185 0.5875834 3 1.925875 379.7216 11 3 824 833 0.5907141 0.5969769 0.5959338 3 -11.639414 480.1953 13 4 1103 1112 0.7853613 0.7916368 0.7891973 2 1.928508 381.3845 14 2 1113 1122 0.7923322 0.7985914 0.7961575 2 -20.798484 493.8865 16 2 1401 1409 0.9938713 0.9994412 0.9973509 1 -20.788259 500.7449 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.125054 1.269957 0.0017986451 -0.5005371 0.005884864 1.755519 3 1.124877 1.269743 0.0022452316 1.6929738 0.007358619 4.574636 4 1.124993 1.269834 0.0012415368 2.3598561 0.003466024 3.373987 6 1.124650 1.269364 -0.0005600944 1.2048411 0.002726513 3.710179 7 1.124800 1.269533 -0.0021166674 -0.8164194 0.005423036 4.122609 9 1.122333 1.266968 -0.0008049594 0.6646817 0.002701066 3.795302 10 1.122163 1.266777 0.0009328540 0.5087677 0.005788304 2.608742 11 1.122098 1.266735 0.0009486655 1.0284411 0.004916256 3.413366 13 1.122005 1.266557 -0.0011419351 1.7768478 0.003048975 5.230496 14 1.122150 1.266712 -0.0004339953 1.2884081 0.003736994 3.265282 16 1.124157 1.269297 -0.0019210951 2.7285919 0.004352237 6.101123 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 404.325 co2l1 = 0.947 co2l0 = -0.002" [1] "co2l0 = -201.87 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "54 out of 1268 1-min values rejected as stack air" [1] "54 out of 1268 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"