[1] "2025-04-30 01:02:46 MDT" [1] "1601" "160111" "d011" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160111a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 67980 63 [1] 60306 [1] 60306 [1] "testing skipping spike filter" [1] 60306 [1] 60306 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:02:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.792" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "136 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.792" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "135 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:02:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:02:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:03:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:03:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 135 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 32 row(s) with low FLSP" [1] "TEMP: 965 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:03:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 401.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 249 258 0.1737801 0.1800394 0.1776051 2 4.625953 376.8035 3 2 259 268 0.1807348 0.1869942 0.1845598 2 -18.096789 494.5119 5 2 549 558 0.3824773 0.3887369 0.3863024 3 -18.191305 492.9403 6 4 559 568 0.3894323 0.3957000 0.3932621 3 4.512594 378.8973 7 3 569 578 0.3963952 0.4026558 0.4016115 3 -9.040000 487.7184 9 4 847 856 0.5912177 0.5974775 0.5950433 2 4.434930 379.0492 10 2 857 866 0.5981728 0.6044328 0.6019984 2 -18.285430 495.4281 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.118357 1.260677 -0.0005170198 0.7432140 0.004208536 5.602123 3 1.118417 1.260731 -0.0008282462 0.4099235 0.006406604 2.356113 5 1.120241 1.263058 -0.0007213486 0.3585727 0.003590886 2.665930 6 1.120319 1.263145 0.0022968124 0.1737816 0.006963152 4.671080 7 1.120539 1.263367 -0.0006745329 0.5385544 0.002316237 1.430546 9 1.121599 1.264693 -0.0011107017 0.6874894 0.003432779 2.442942 10 1.121705 1.264814 -0.0013558191 1.4052585 0.003769508 3.779589 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.895 co2l1 = 0.947 co2l0 = -0.016" [1] "co2l0 = -198.33 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "32 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "83 out of 873 1-min values rejected as stack air" [1] "83 out of 873 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"