[1] "2025-04-30 01:02:32 MDT" [1] "1601" "160110" "d010" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160110a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 49213 63 [1] 39660 [1] 39660 [1] "testing skipping spike filter" [1] 39660 [1] 39660 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:02:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.793" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "175 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.793" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "177 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:02:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:02:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:02:39 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:02:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 177 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 638 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:02:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 397.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.76 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 5 [3,] 6 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 8 0.5559569 0.5608255 0.5590868 2 -17.739896 481.0495 2 4 9 18 0.5615209 0.5677823 0.5653465 2 4.934625 370.4719 3 5 19 28 0.5684796 0.5747390 0.5736958 NA -8.086781 455.2629 5 4 289 298 0.7563091 0.7625688 0.7601348 2 4.901336 383.7206 6 2 299 308 0.7632643 0.7695243 0.7670897 2 -17.812188 498.2356 8 2 589 598 0.9650139 0.9712735 0.9688393 3 -17.962211 494.3162 9 4 599 608 0.9719689 0.9782280 0.9757941 3 4.747945 365.9459 10 3 609 618 0.9789237 0.9851830 0.9841399 3 -8.834320 482.2400 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.118895 1.260999 -0.0006239667 -5.9651909 0.0018369755 13.349904 2 1.119126 1.261437 -0.0024838922 -2.3409474 0.0084717229 17.602867 3 1.119225 1.261719 -0.0011858201 3.1291775 0.0008396893 4.265003 5 1.119535 1.261887 -0.0018283148 -0.3244150 0.0046033443 2.180372 6 1.119517 1.261867 -0.0013385542 1.0528608 0.0035894190 2.786123 8 1.118551 1.260881 0.0001181628 0.3510032 0.0039412450 2.212952 9 1.118434 1.260811 0.0016621529 4.8320810 0.0060447953 21.654595 10 1.118506 1.260853 -0.0003544123 0.2903755 0.0022171303 1.819565 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.575 co2l1 = 0.948 co2l0 = -0.007" [1] "co2l0 = -196.94 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "8 out of 55 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "47 out of 525 1-min values rejected as stack air" [1] "47 out of 525 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"