[1] "2025-04-30 01:01:44 MDT" [1] "1601" "160105" "d005" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/160105a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:01:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.876, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.876, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:01:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:01:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:02:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:02:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:02:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.12 O2 = -572.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.951 co2off = 399.89 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 194 203 0.1371215 0.1433808 0.1409464 2 6.594344 379.6220 3 2 204 213 0.1440764 0.1503356 0.1479013 2 -16.087344 500.5714 5 2 492 501 0.3458565 0.3521159 0.3496819 3 -16.013109 488.7921 6 4 502 511 0.3528113 0.3590706 0.3566365 3 6.681203 380.2862 7 3 512 521 0.3597662 0.3660255 0.3649822 3 -6.875695 481.2775 9 4 792 801 0.5547560 0.5610174 0.5585823 2 6.673406 372.6444 10 2 802 811 0.5617132 0.5679766 0.5655424 2 -16.026305 491.5513 12 2 1092 1101 0.7634744 0.7697350 0.7673007 3 -16.161469 496.8390 13 4 1102 1111 0.7704305 0.7766898 0.7742554 3 6.506750 373.5165 14 5 1112 1121 0.7773852 0.7836450 0.7826019 NA -6.205188 447.5492 15 3 1122 1131 0.7843404 0.7906005 0.7895571 3 -7.050906 487.1661 17 4 1391 1400 0.9721759 0.9784348 0.9760007 2 6.359898 378.1182 18 2 1401 1410 0.9791305 0.9853901 0.9829559 2 -16.356406 492.7234 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.147290 1.290777 0.0027248682 -1.12201740 0.007725552 4.906166 3 1.147355 1.290900 -0.0028364809 0.25132380 0.007464948 4.551775 5 1.144382 1.287489 -0.0007757879 -0.81718038 0.005423242 8.251257 6 1.144199 1.287246 0.0003937202 0.05115888 0.004370885 4.232285 7 1.144033 1.287084 -0.0005594499 -2.25161065 0.001869766 3.660875 9 1.140954 1.283497 0.0014777263 0.38551192 0.004994752 3.535975 10 1.140983 1.283506 -0.0039829193 3.79246169 0.010256990 10.035809 12 1.138285 1.280630 -0.0036702329 -0.50931430 0.009379523 2.794123 13 1.138033 1.280382 -0.0012867380 -0.27188002 0.004794551 3.122633 14 1.137947 1.280333 0.0051186017 0.13803904 0.003623922 3.028508 15 1.138076 1.280434 0.0030471299 -2.32157648 0.008549227 3.067103 17 1.134713 1.277063 -0.0010675985 -0.82644624 0.004135665 3.254105 18 1.134754 1.277100 -0.0026718294 1.11694544 0.007372881 3.427454 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.96 co2l1 = 0.948 co2l0 = -0.016" [1] "co2l0 = -197.7 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "93 out of 290 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "197 out of 1263 1-min values rejected as stack air" [1] "197 out of 1263 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"