[1] "2025-04-30 00:57:14 MDT" [1] "1510" "151227" "d361" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151227a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 70818 63 [1] 70818 [1] 70818 [1] "testing skipping spike filter" [1] 70818 [1] 70818 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:57:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 0.78" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "17 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 0.78" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:57:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:57:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:57:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:57:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 12 row(s) with high TFRIDGE" [1] "TEMP: 1150 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:57:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 407.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.83 minutes" [1] "Shortest Cal: 7.03 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 156 165 0.1182350 0.1244949 0.1220607 2 2.895648 381.8913 3 2 166 175 0.1251903 0.1314502 0.1290160 2 -19.795711 497.3761 5 2 454 463 0.3269271 0.3331862 0.3307520 3 -19.829969 492.6043 6 4 464 473 0.3338817 0.3401427 0.3377087 3 2.867930 380.5948 7 3 474 483 0.3408380 0.3470973 0.3460541 3 -10.691180 480.4866 9 4 754 761 0.5356134 0.5404923 0.5387498 2 2.882854 377.3972 10 2 762 770 0.5425775 0.5488368 0.5466508 2 -19.807016 493.8048 12 2 1041 1050 0.7443495 0.7506090 0.7481749 3 -19.748227 495.5365 13 4 1051 1060 0.7513044 0.7575644 0.7551302 3 2.945453 389.2051 14 5 1061 1070 0.7582599 0.7645231 0.7634782 NA -9.834281 456.7478 15 3 1071 1080 0.7652186 0.7714781 0.7704346 3 -10.604578 477.1184 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.133547 1.282486 9.797795e-04 2.1492081 0.0035352084 6.129637 3 1.133573 1.282516 -1.324615e-03 0.9275759 0.0043619624 4.518886 5 1.130631 1.279335 -2.026900e-03 2.4747681 0.0055260140 6.381172 6 1.130509 1.279199 -5.266024e-05 1.0965917 0.0028005575 5.473557 7 1.130560 1.279261 2.488702e-04 -2.9204480 0.0031997205 3.859177 9 1.133131 1.282033 -1.519559e-03 1.0197042 0.0029327533 2.336625 10 1.133185 1.282008 -1.999486e-03 0.4800805 0.0062335565 3.522267 12 1.136467 1.285700 6.162910e-05 0.3060268 0.0021157724 2.652036 13 1.136679 1.285978 9.701105e-04 2.9816447 0.0060345684 17.155712 14 1.136652 1.285985 -6.863561e-04 6.0865789 0.0004861359 8.551647 15 1.136825 1.286187 -3.938047e-04 -0.6161961 0.0027681523 3.713203 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.431 co2l1 = 0.948 co2l0 = -0.006" [1] "co2l0 = -203.38 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "151 out of 170 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "19 out of 1011 1-min values rejected as stack air" [1] "19 out of 1011 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"