[1] "2025-04-30 00:56:49 MDT" [1] "1510" "151226" "d360" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151226a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85929 63 [1] 85929 [1] 85929 [1] "testing skipping spike filter" [1] 85929 [1] 85929 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:56:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "15 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "15 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:56:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:56:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:57:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:57:05 MDT" [1] "reading in recalculated plot titles" [1] "Removed 15 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1050 row(s) with high TFRIDGE" [1] "TEMP: 366 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:57:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 396.18 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.44 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 1 2 1 6 0.3794606 0.3829375 0.3818946 3 -19.777047 496.4295 1.135586 2 4 7 16 0.3836332 0.3898927 0.3874586 3 2.912109 375.9466 1.135546 3 3 17 26 0.3905880 0.3968509 0.3958079 3 -10.633961 483.6020 1.135699 5 3 150 158 0.4921071 0.4983694 0.4976739 3 -10.610393 486.6261 1.136368 6 2 159 168 0.4990649 0.5053244 0.5028904 3 -19.747695 496.8454 1.136588 7 4 169 178 0.5060205 0.5122869 0.5098492 3 2.934867 381.4696 1.136535 8 5 179 188 0.5129822 0.5192450 0.5182000 NA -10.081938 453.0354 1.136748 jfcv2 co2slp o2slp co2sd o2sd 1 1.284367 -0.0011173533 -1.4179056 0.002414892 1.9546113 2 1.284341 0.0008335941 1.1527158 0.004702031 3.3361493 3 1.284509 -0.0011945443 -0.2886723 0.003041186 0.4022711 5 1.285384 -0.0010944097 1.6818524 0.003513500 2.6376022 6 1.285462 -0.0016367215 -0.1351972 0.004234536 3.7170656 7 1.285421 0.0014373360 0.1876581 0.005106285 1.2384290 8 1.285659 -0.0028716497 1.8352930 0.002032932 2.3813621 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.401 co2l1 = 0.948 co2l0 = -0.007" [1] "co2l0 = -197.75 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "11 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 271 1-min values rejected as stack air" [1] "14 out of 271 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"