[1] "2025-04-30 00:56:14 MDT" [1] "1510" "151225" "d359" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151225a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:56:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "27 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "27 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:56:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:56:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:56:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:56:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 27 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 675 row(s) with high TFRIDGE" [1] "TEMP: 734 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:56:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 413.57 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.44 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 46 51 0.1243947 0.1278718 0.1268288 1 -19.938609 491.9705 4 2 326 335 0.5418178 0.5480787 0.5456441 3 -19.934039 497.1565 5 4 336 345 0.5487742 0.5550336 0.5525994 3 2.779555 379.5381 6 5 346 355 0.5557292 0.5619920 0.5609489 NA -10.130938 453.2879 7 3 356 365 0.5626880 0.5689514 0.5679079 3 -10.783398 482.5149 10 4 626 635 0.7505508 0.7568101 0.7543758 2 2.772477 381.7096 11 2 636 645 0.7575068 0.7637679 0.7613336 2 -19.929875 492.7323 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.122115 1.269916 -0.002228285 2.04743355 0.003311271 3.226676 4 1.122587 1.270156 -0.001477358 0.05706113 0.004173008 4.469559 5 1.122550 1.270086 0.003083620 1.61427765 0.008436107 5.601786 6 1.122591 1.270124 -0.002371739 3.93972098 0.001679379 6.680500 7 1.122584 1.270123 -0.001531032 4.15893097 0.004405498 6.019478 10 1.123361 1.270993 0.003025909 1.45711877 0.007998461 3.688245 11 1.123532 1.271163 -0.000573338 0.12552540 0.003854786 1.695811 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.552 co2l1 = 0.947 co2l0 = -0.006" [1] "co2l0 = -200.42 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "47 out of 270 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "223 out of 644 1-min values rejected as stack air" [1] "221 out of 441 Line 1 1-min values rejected as stack air" [1] "2 out of 203 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"