[1] "2025-04-30 00:55:44 MDT" [1] "1510" "151224" "d358" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151224a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85860 63 [1] 85860 [1] 85860 [1] "testing skipping spike filter" [1] 85860 [1] 85860 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:55:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "78 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.89, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "78 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:55:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:55:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:56:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:56:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 78 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 106 row(s) with high TFRIDGE" [1] "TEMP: 1246 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:56:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 399.59 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.06 minutes" [1] "Average Cal: 8.82 minutes" [1] "Shortest Cal: 7.05 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 12 21 0.08207778 0.08833695 0.08590299 2 2.829922 379.9951 3 2 22 31 0.08903247 0.09529178 0.09285787 2 -19.866398 493.3502 5 2 311 320 0.29064167 0.29693762 0.29449055 3 -19.906617 491.4895 6 4 321 330 0.29763736 0.30392876 0.30148192 3 2.794195 378.6747 7 5 331 340 0.30462810 0.31092121 0.30987213 NA -10.159781 451.7451 8 3 341 350 0.31162153 0.31791432 0.31686446 3 -10.759539 479.2560 10 4 603 612 0.49902448 0.50531947 0.50287104 2 2.793578 380.9835 11 2 613 620 0.50601939 0.51091435 0.50916664 2 -19.908937 496.5474 13 2 831 840 0.70745923 0.71375810 0.71130799 3 -19.872031 492.7536 14 4 841 849 0.71446108 0.72075466 0.71855720 3 2.812207 379.5117 15 3 850 858 0.72215394 0.72774774 0.72704848 3 -10.751054 479.6944 17 4 1127 1136 0.91594210 0.92223507 0.91978785 2 2.763141 375.6224 18 2 1137 1146 0.92293521 0.92923082 0.92678243 2 -19.951258 492.3773 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.125479 1.273468 7.950166e-04 0.7995959 0.002179129 4.5867541 3 1.125574 1.273564 1.240243e-04 1.7979074 0.001924042 4.7176402 5 1.122728 1.270560 4.750951e-04 0.3316887 0.003070132 2.0613221 6 1.122588 1.270411 -1.842544e-04 0.8970873 0.005694652 2.6618283 7 1.122461 1.270258 -1.675215e-03 0.5338183 0.001193243 0.8531338 8 1.122391 1.270192 -1.303882e-03 -3.1614847 0.004305175 4.1252469 10 1.122149 1.269927 -4.284437e-05 0.8742866 0.002403436 4.1108210 11 1.122580 1.270385 -1.933529e-03 0.6915839 0.004639167 2.8341177 13 1.123784 1.271695 -2.733566e-03 -0.6013449 0.006793100 1.7505385 14 1.123124 1.271064 1.313575e-03 1.1715118 0.003697596 3.1893215 15 1.123419 1.271142 -7.960167e-04 -4.3016411 0.003122797 4.3325563 17 1.122747 1.270601 -8.158033e-04 -0.3775071 0.004021809 2.2879109 18 1.122849 1.270708 -1.095193e-03 -0.2433923 0.004065787 1.6303710 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.528 co2l1 = 0.948 co2l0 = -0.005" [1] "co2l0 = -200.61 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "28 out of 120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "92 out of 1083 1-min values rejected as stack air" [1] "48 out of 558 Line 1 1-min values rejected as stack air" [1] "44 out of 525 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"