[1] "2025-04-30 00:55:11 MDT" [1] "1510" "151223" "d357" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151223a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:55:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.887, ave o2scale2 = 0.784" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.887, ave o2scale2 = 0.784" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:55:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:55:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:55:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:55:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 37 row(s) with high TFRIDGE" [1] "TEMP: 1394 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:55:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 403.51 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 55 64 0.03832474 0.04458397 0.04214982 3 -19.779328 491.8274 3 4 65 74 0.04527934 0.05154225 0.04910569 3 2.917969 379.2111 4 5 75 84 0.05223773 0.05849690 0.05745387 NA -10.001594 457.0094 5 3 85 94 0.05919230 0.06545220 0.06440900 3 -10.631641 479.8320 9 4 355 364 0.24699306 0.25325237 0.25081820 2 2.899992 376.5995 10 2 365 374 0.25394826 0.26020735 0.25777342 2 -19.791758 495.9955 13 2 655 664 0.45566204 0.46192135 0.45948706 3 -19.773188 491.6093 14 4 665 674 0.46261690 0.46887616 0.46644202 3 2.930344 379.3323 15 3 675 684 0.46957173 0.47583102 0.47478800 3 -10.616227 486.0265 17 4 954 963 0.66435527 0.67061806 0.66818342 2 2.915898 376.5746 18 2 964 973 0.67131366 0.67758290 0.67514249 2 -19.775648 498.4632 20 2 1250 1259 0.87338015 0.87964005 0.87720581 3 -19.806000 495.9405 21 4 1260 1269 0.88033565 0.88659850 0.88416446 3 2.893320 380.7675 22 3 1270 1279 0.88729398 0.89355385 0.89251076 3 -10.661875 484.6299 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.127485 1.275387 1.054828e-04 -0.3345746 0.001573621 3.1984965 3 1.127602 1.275418 2.154176e-03 0.2044793 0.005538623 5.2689044 4 1.127685 1.275500 -4.805692e-03 2.6741199 0.003402951 3.5356185 5 1.127641 1.275504 -1.424953e-03 -3.4893373 0.003935693 4.5995652 9 1.128084 1.275944 2.057412e-03 1.7345251 0.005352469 5.4845966 10 1.128211 1.276087 -3.235658e-03 0.9595485 0.008232763 2.9497018 13 1.128515 1.276509 -3.090624e-03 -0.7218574 0.008298760 4.1757254 14 1.128399 1.276352 2.349290e-03 -0.3249176 0.008679049 3.4708370 15 1.128541 1.276501 -4.383937e-05 -0.6179198 0.002147189 0.9143147 17 1.128326 1.276317 -8.038486e-04 0.6328865 0.003197889 3.3198317 18 1.128360 1.276351 1.815872e-04 0.7504394 0.001366425 2.9925470 20 1.127675 1.275788 -9.678032e-05 -0.4753091 0.003103677 2.1898298 21 1.127642 1.275727 1.867130e-03 0.2877912 0.005286590 3.7582759 22 1.127541 1.275614 -8.469298e-04 -0.9017191 0.002666341 1.3182663 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.417 co2l1 = 0.948 co2l0 = -0.008" [1] "co2l0 = -198.72 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "75 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "60 out of 1206 1-min values rejected as stack air" [1] "55 out of 1054 Line 1 1-min values rejected as stack air" [1] "5 out of 152 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"