[1] "2025-04-30 00:54:39 MDT" [1] "1510" "151222" "d356" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151222a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:54:43 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:54:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:54:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:55:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:55:03 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1435 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:55:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 413.51 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 10 0.001753328 0.008013223 0.005578758 1 -19.893445 491.2327 3 2 291 300 0.203484925 0.209747975 0.207310540 3 -19.863187 492.4309 4 4 301 310 0.210443345 0.216702604 0.214268656 3 2.843070 379.8785 5 3 311 320 0.217398495 0.223659288 0.222614996 3 -10.720367 478.3055 7 4 591 600 0.412163223 0.418422454 0.415988256 2 2.845047 379.6714 8 2 601 610 0.419118056 0.425380845 0.422943833 2 -19.865070 491.4858 10 2 891 900 0.620838455 0.627097367 0.624663473 3 -19.835641 496.0955 11 4 901 910 0.627793171 0.634052083 0.631618117 3 2.870008 379.0511 12 3 911 920 0.634747714 0.641007031 0.639964034 3 -10.698680 483.5430 14 4 1191 1200 0.829617708 0.835880613 0.833445211 2 2.877320 381.9102 15 2 1201 1210 0.836575955 0.842835648 0.840401147 2 -19.832500 492.1428 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.122029 1.269468 -6.783035e-04 1.6766186 0.002829105 4.3427880 3 1.121189 1.268541 7.247208e-05 0.1670923 0.002049880 1.8483930 4 1.121083 1.268427 1.983079e-03 -0.5752183 0.005195018 2.8687012 5 1.121157 1.268500 6.350431e-04 -0.9925823 0.002583740 1.5036680 7 1.121720 1.269040 -3.418112e-04 1.3408006 0.002919063 4.0605937 8 1.121820 1.269136 -2.576360e-03 0.0929859 0.006863988 0.8136289 10 1.123828 1.271288 1.203511e-03 2.2938157 0.004925534 6.0769980 11 1.123889 1.271326 -1.385693e-03 1.5004919 0.005709430 4.2801163 12 1.123952 1.271381 8.952862e-04 3.4220916 0.003341340 4.4626226 14 1.125523 1.273250 -7.609877e-04 1.2158114 0.003254536 4.3642143 15 1.125634 1.273399 -2.374098e-03 -0.2543713 0.006990507 2.5330769 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.481 co2l1 = 0.947 co2l0 = -0.005" [1] "co2l0 = -202.32 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "32 out of 45 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "13 out of 1290 1-min values rejected as stack air" [1] "13 out of 1290 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"